Computational identification of harmful mutation regions to the activity of transposable elements.
- Published: 01 Nov 2017 Journal: BMC Genomics, volume 18 (eissn: 1471-2164,
Copyright policy) - Publisher: Springer Nature
- University of Saskatchewan Canada
- Funder: Natural Sciences and Engineering Research Council of Canada (NSERC)
McClintock, B. Chromosome organization and genic expression. Cold Spring Harbor Symposia on Quantitative Biology. 1951 [OpenAIRE]
de Koning, APJ, Gu, W, Castoe, TA, Batzer, MA, Pollock, DD. Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet. 2011; 7 (12): 1002384 [OpenAIRE] [DOI]
Lerat, E. Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Heredity. 2009; 104 (6): 520-33 [OpenAIRE] [PubMed] [DOI]
Finnegan, DJ. Eukaryotic transposable elements and genome evolution. Trends Genet. 1989; 5: 103-7 [OpenAIRE] [PubMed] [DOI]
Wicker, T, Sabot, F, Hua-Van, A, Bennetzen, JL, Capy, P, Chalhoub, B, Flavell, A, Leroy, P, Morgante, M, Panaud, O. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 2007; 8 (12): 973-82 [OpenAIRE] [PubMed] [DOI]
Kazazian, HH. Mobile DNA: Finding Treasure in Junk. 2011
Giordano, J, Ge, Y, Gelfand, Y, Abrusán, G, Benson, G, Warburton, PE. Evolutionary history of mammalian transposons determined by genome-wide defragmentation. PLoS Comput Biol. 2007; 3 (7): 137 [OpenAIRE] [DOI]
Graur, D. Molecular and Genome Evolution. 2016
Jurka, J, Kapitonov, VV, Pavlicek, A, Klonowski, P, Kohany, O, Walichiewicz, J. Repbase update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005; 110 (1–4): 462-7 [OpenAIRE] [PubMed] [DOI]
Feschotte, C, Jiang, N, Wessler, SR. Plant transposable elements: where genetics meets genomics. Nat Rev Genet. 2002; 3 (5): 329-41 [OpenAIRE] [PubMed] [DOI]
Khan, H, Smit, A, Boissinot, S. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res. 2006; 16 (1): 78-87 [OpenAIRE] [PubMed] [DOI]
Mills, RE, Bennett, EA, Iskow, RC, Devine, SE. Which transposable elements are active in the human genome. Trends Genet. 2007; 23 (4): 183-91 [OpenAIRE] [PubMed] [DOI]
Kazazian, HH. An estimated frequency of endogenous insertional mutations in humans. Nat Genet. 1999; 22 (2): 130-130 [OpenAIRE] [PubMed] [DOI]
Li, X, Scaringe, WA, Hill, KA, Roberts, S, Mengos, A, Careri, D, Pinto, MT, Kasper, CK, Sommer, SS. Frequency of recent retrotransposition events in the human factor ix gene. Hum Mutat. 2001; 17 (6): 511-9 [OpenAIRE] [PubMed] [DOI]
Cordaux, R, Hedges, DJ, Herke, SW, Batzer, MA. Estimating the retrotransposition rate of human Alu elements. Gene. 2006; 373: 134-7 [OpenAIRE] [PubMed] [DOI]
- University of Saskatchewan Canada
- Funder: Natural Sciences and Engineering Research Council of Canada (NSERC)
McClintock, B. Chromosome organization and genic expression. Cold Spring Harbor Symposia on Quantitative Biology. 1951 [OpenAIRE]
de Koning, APJ, Gu, W, Castoe, TA, Batzer, MA, Pollock, DD. Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet. 2011; 7 (12): 1002384 [OpenAIRE] [DOI]
Lerat, E. Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Heredity. 2009; 104 (6): 520-33 [OpenAIRE] [PubMed] [DOI]
Finnegan, DJ. Eukaryotic transposable elements and genome evolution. Trends Genet. 1989; 5: 103-7 [OpenAIRE] [PubMed] [DOI]
Wicker, T, Sabot, F, Hua-Van, A, Bennetzen, JL, Capy, P, Chalhoub, B, Flavell, A, Leroy, P, Morgante, M, Panaud, O. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 2007; 8 (12): 973-82 [OpenAIRE] [PubMed] [DOI]
Kazazian, HH. Mobile DNA: Finding Treasure in Junk. 2011
Giordano, J, Ge, Y, Gelfand, Y, Abrusán, G, Benson, G, Warburton, PE. Evolutionary history of mammalian transposons determined by genome-wide defragmentation. PLoS Comput Biol. 2007; 3 (7): 137 [OpenAIRE] [DOI]
Graur, D. Molecular and Genome Evolution. 2016
Jurka, J, Kapitonov, VV, Pavlicek, A, Klonowski, P, Kohany, O, Walichiewicz, J. Repbase update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005; 110 (1–4): 462-7 [OpenAIRE] [PubMed] [DOI]
Feschotte, C, Jiang, N, Wessler, SR. Plant transposable elements: where genetics meets genomics. Nat Rev Genet. 2002; 3 (5): 329-41 [OpenAIRE] [PubMed] [DOI]
Khan, H, Smit, A, Boissinot, S. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res. 2006; 16 (1): 78-87 [OpenAIRE] [PubMed] [DOI]
Mills, RE, Bennett, EA, Iskow, RC, Devine, SE. Which transposable elements are active in the human genome. Trends Genet. 2007; 23 (4): 183-91 [OpenAIRE] [PubMed] [DOI]
Kazazian, HH. An estimated frequency of endogenous insertional mutations in humans. Nat Genet. 1999; 22 (2): 130-130 [OpenAIRE] [PubMed] [DOI]
Li, X, Scaringe, WA, Hill, KA, Roberts, S, Mengos, A, Careri, D, Pinto, MT, Kasper, CK, Sommer, SS. Frequency of recent retrotransposition events in the human factor ix gene. Hum Mutat. 2001; 17 (6): 511-9 [OpenAIRE] [PubMed] [DOI]
Cordaux, R, Hedges, DJ, Herke, SW, Batzer, MA. Estimating the retrotransposition rate of human Alu elements. Gene. 2006; 373: 134-7 [OpenAIRE] [PubMed] [DOI]
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