publication . Article . 2016

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum

SURAPAREDDY SREENIVASAPRASAD; Riccardo Baroncelli; Gaétan LE FLOCH; Michael R. Thon; Giovanni Vannacci; daniel buchvaldt amby; Serenella Sukno; Sabrina Sarrocco;
Open Access
  • Published: 05 Aug 2016 Journal: BMC Genomics, volume 17 (eissn: 1471-2164, Copyright policy)
  • Publisher: Springer Science and Business Media LLC
Abstract
Background Many species belonging to the genus Colletotrichum cause anthracnose disease on a wide range of plant species. In addition to their economic impact, the genus Colletotrichum is a useful model for the study of the evolution of host specificity, speciation and reproductive behaviors. Genome projects of Colletotrichum species have already opened a new era for studying the evolution of pathogenesis in fungi. Results We sequenced and annotated the genomes of four strains in the Colletotrichum acutatum species complex (CAsc), a clade of broad host range pathogens within the genus. The four CAsc proteomes and secretomes along with those representing an addit...
Subjects
Medical Subject Headings: fungifood and beverages
free text keywords: /dk/atira/pure/researchoutput/pubmedpublicationtype/D016428, Journal Article, Biotechnology, Genetics, Research Article, CAZyme, Plant pathogen, Anthracnose, Fungal genomics, Colletotrichum spp., QK, SB, Colletotrichum spp, [SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Anthracnose; CAZyme; Colletotrichum spp; Fungal genomics; Plant pathogen; Biotechnology; Genetics
Related Organizations
Funded by
WT
Project
  • Funder: Wellcome Trust (WT)
104 references, page 1 of 7

1. Bailey J, O'Connell R, Pring R, Nash C. Infection strategies of Colletotrichum species. In: Bailey JA, Jeger MJ, editors. Colletotrichum: biology, pathology and control. Wallingford: CAB International; 1992. p. 88-120.

2. Cannon PF, Damm U, Johnston PR, Weir BS. Colletotrichum - current status and future directions. Stud Mycol. 2012;73:181-213. [OpenAIRE]

3. Silva DN, Talhinhas P, Cai L, Manuel L, Gichuru EK, Loureiro A, et al. Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae. Mol Ecol. 2012;21:2655-70.

4. Dean R, Van Kan JAL, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, et al. The Top 10 fungal pathogens in molecular plant pathology: Top 10 fungal pathogens. Mol Plant Pathol. 2012;13:414-30.

5. Damm U, Cannon PF, Woudenberg JHC, Crous PW. The Colletotrichum acutatum species complex. Stud Mycol. 2012;73:37-113. [OpenAIRE]

6. Nirenberg HI, Feiler U, Hagedorn G. Description of Colletotrichum lupini comb. nov. in modern terms. Mycologia. 2002;94:307-20.

7. Talhinhas P, Baroncelli R, Le Floch G. Anthracnose of lupins caused by Colletotrichum lupini: a recent disease and a successful worldwide pathogen. J Plant Pathol. 2016;98:5-14.

8. von Arx JA. Die Arten der Gattung Colletotrichum Cda. Phytopathol Z. 1957;29:413-68.

9. Weir BS, Johnston PR, Damm U. The Colletotrichum gloeosporioides species complex. Stud Mycol. 2012;73:115-80.

10. Damm U, Cannon PF, Woudenberg JHC, Johnston PR, Weir BS, Tan YP, et al. The Colletotrichum boninense species complex. Stud Mycol. 2012;73:1-36. [OpenAIRE]

11. Damm U, Cannon PF, Liu F, Barreto RW, Guatimosim E, Crous PW. The Colletotrichum orbiculare species complex: Important pathogens of field crops and weeds. Fungal Divers. 2013;61:29-59.

12. Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, et al. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature. 2005;434:980-6.

13. Krijger J-J, Thon MR, Deising HB, Wirsel SG. Compositions of fungal secretomes indicate a greater impact of phylogenetic history than lifestyle adaptation. BMC Genomics. 2014;15:722. [OpenAIRE]

14. Zhao Z, Liu H, Wang C, Xu J-R. Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. BMC Genomics. 2013;14:274.

15. Tsai IJ, Tanaka E, Masuya H, Tanaka R, Hirooka Y, Endoh R, et al. Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. Genome Biol Evol. 2014;6:861-72.

104 references, page 1 of 7
Abstract
Background Many species belonging to the genus Colletotrichum cause anthracnose disease on a wide range of plant species. In addition to their economic impact, the genus Colletotrichum is a useful model for the study of the evolution of host specificity, speciation and reproductive behaviors. Genome projects of Colletotrichum species have already opened a new era for studying the evolution of pathogenesis in fungi. Results We sequenced and annotated the genomes of four strains in the Colletotrichum acutatum species complex (CAsc), a clade of broad host range pathogens within the genus. The four CAsc proteomes and secretomes along with those representing an addit...
Subjects
Medical Subject Headings: fungifood and beverages
free text keywords: /dk/atira/pure/researchoutput/pubmedpublicationtype/D016428, Journal Article, Biotechnology, Genetics, Research Article, CAZyme, Plant pathogen, Anthracnose, Fungal genomics, Colletotrichum spp., QK, SB, Colletotrichum spp, [SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Anthracnose; CAZyme; Colletotrichum spp; Fungal genomics; Plant pathogen; Biotechnology; Genetics
Related Organizations
Funded by
WT
Project
  • Funder: Wellcome Trust (WT)
104 references, page 1 of 7

1. Bailey J, O'Connell R, Pring R, Nash C. Infection strategies of Colletotrichum species. In: Bailey JA, Jeger MJ, editors. Colletotrichum: biology, pathology and control. Wallingford: CAB International; 1992. p. 88-120.

2. Cannon PF, Damm U, Johnston PR, Weir BS. Colletotrichum - current status and future directions. Stud Mycol. 2012;73:181-213. [OpenAIRE]

3. Silva DN, Talhinhas P, Cai L, Manuel L, Gichuru EK, Loureiro A, et al. Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae. Mol Ecol. 2012;21:2655-70.

4. Dean R, Van Kan JAL, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, et al. The Top 10 fungal pathogens in molecular plant pathology: Top 10 fungal pathogens. Mol Plant Pathol. 2012;13:414-30.

5. Damm U, Cannon PF, Woudenberg JHC, Crous PW. The Colletotrichum acutatum species complex. Stud Mycol. 2012;73:37-113. [OpenAIRE]

6. Nirenberg HI, Feiler U, Hagedorn G. Description of Colletotrichum lupini comb. nov. in modern terms. Mycologia. 2002;94:307-20.

7. Talhinhas P, Baroncelli R, Le Floch G. Anthracnose of lupins caused by Colletotrichum lupini: a recent disease and a successful worldwide pathogen. J Plant Pathol. 2016;98:5-14.

8. von Arx JA. Die Arten der Gattung Colletotrichum Cda. Phytopathol Z. 1957;29:413-68.

9. Weir BS, Johnston PR, Damm U. The Colletotrichum gloeosporioides species complex. Stud Mycol. 2012;73:115-80.

10. Damm U, Cannon PF, Woudenberg JHC, Johnston PR, Weir BS, Tan YP, et al. The Colletotrichum boninense species complex. Stud Mycol. 2012;73:1-36. [OpenAIRE]

11. Damm U, Cannon PF, Liu F, Barreto RW, Guatimosim E, Crous PW. The Colletotrichum orbiculare species complex: Important pathogens of field crops and weeds. Fungal Divers. 2013;61:29-59.

12. Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, et al. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature. 2005;434:980-6.

13. Krijger J-J, Thon MR, Deising HB, Wirsel SG. Compositions of fungal secretomes indicate a greater impact of phylogenetic history than lifestyle adaptation. BMC Genomics. 2014;15:722. [OpenAIRE]

14. Zhao Z, Liu H, Wang C, Xu J-R. Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. BMC Genomics. 2013;14:274.

15. Tsai IJ, Tanaka E, Masuya H, Tanaka R, Hirooka Y, Endoh R, et al. Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. Genome Biol Evol. 2014;6:861-72.

104 references, page 1 of 7
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