research data . Dataset . 2019

Human-specific tandem repeat expansion and differential gene expression during primate evolution

Name: Human-specific tandem repeat expansion and differential gene expression during primate evolution
Keywords: tandem repeats, haplotype-resolved tandem repeat assemblies, STR, VNTR, repeat instability, genome instability, Genetics, Molecular Biology, Pharmacology, Evolutionary Biology, Ecology, Immunology, Cancer, Science Policy, 110309 Infectious Diseases, 60506 Virology, 59999 Environmental Sciences not elsewhere classified, 69999 Biological Sciences not elsewhere classified

Sulovari, Arvis; Li, Ruiyang; Audano, Peter; Porubsky, David; Vollger, Mitchell; Logsdon, Glennis; Warren, Wesley; Pollen, Alex; Chaisson, Mark; Eichler, Evan;

Open Access

Published: 06 Sep 2019

Publisher: Zenodo

Summary
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Abstract

THIS DATASET IS PART OF THE FOLLOWING STUDY: <a href="https://www.pnas.org/content/early/2019/10/22/1912175116">https://www.pnas.org/content/early/2019/10/22/1912175116</a>   THE RAW SEQUENCING 10x GENOMICS READS CAN BE DOWNLOADED FROM SRA: <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA593056">https://www.ncbi.nlm.nih.gov/bioproject/PRJNA593056</a> ORIGINAL UPLOAD: 09/06/2019 UPDATES: 10/28/2019; 01/27/2020 DESCRIPTION: Contigs were assembled using Phased-SV (<a href="https://www.nature.com/articles/s41467-018-08148-z">Chaisson et al, Nature Communications 2019</a>) on six human haplotypes (i.e., H0...

doi: 10.5281/zenodo.3401477 , 10.5281/zenodo.3401476

Subjects

free text keywords: tandem repeats, haplotype-resolved tandem repeat assemblies, STR, VNTR, repeat instability, genome instability, Genetics, Molecular Biology, Pharmacology, Evolutionary Biology, Ecology, Immunology, Cancer, Science Policy, 110309 Infectious Diseases, 60506 Virology, 59999 Environmental Sciences not elsewhere classified, 69999 Biological Sciences not elsewhere classified

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Science and Innovation Policy Studies

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