publication . Article . Other literature type . 2005

Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE

Fred S. Dietrich; Zhihong Zhang;
Open Access
  • Published: 16 May 2005 Journal: Nucleic Acids Research, volume 33, pages 2,838-2,851 (issn: 0305-1048, eissn: 1362-4962, Copyright policy)
  • Publisher: Oxford University Press (OUP)
Abstract
A minimally addressed area in Saccharomyces cerevisiae research is the mapping of transcription start sites (TSS). Mapping of TSS in S.cerevisiae has the potential to contribute to our understanding of gene regulation, transcription, mRNA stability and aspects of RNA biology. Here, we use 5′ SAGE to map 5′ TSS in S.cerevisiae. Tags identifying the first 15–17 bases of the transcripts are created, ligated to form ditags, amplified, concatemerized and ligated into a vector to create a library. Each clone sequenced from this library identifies 10–20 TSS. We have identified 13 746 unique, unambiguous sequence tags from 2231 S.cerevisiae genes. TSS identified in this...
Subjects
Medical Subject Headings: genetic structuresbacterial infections and mycoses
free text keywords: Genetics, Article, Gene, Sequence-tagged site, Primer extension, Open reading frame, Gene expression profiling, Regulation of gene expression, Consensus sequence, Transcription (biology), Biology
Related Organizations
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