publication . Preprint . 2020

Targeted sequence capture array for phylogenetics and population genomics in the Salicaceae

Brian J. Sanderson; Brian J. Sanderson; Tao Ma; Quentin C. B. Cronk; Stephen P. DiFazio; Matthew S. Olson;
Open Access English
  • Published: 09 May 2020
  • Publisher: Cold Spring Harbor Laboratory
Abstract
<jats:title>Abstract</jats:title><jats:sec><jats:title>Premise of the study</jats:title><jats:p>The family Salicaceae has proved taxonomically challenging, especially in the genus <jats:italic>Salix</jats:italic>, which is speciose and features frequent hybridization and polyploidy. Past efforts to reconstruct the phylogeny with molecular barcodes have failed to resolve the species relationships of many sections of the genus.</jats:p></jats:sec><jats:sec><jats:title>Methods</jats:title><jats:p>We used the wealth of sequence data in the family to design sequence capture probes to target regions of 300-1200 base pairs of exonic regions of 972 genes.</jats:p></jats...
Subjects
free text keywords: Locus (genetics), Population genomics, Phylogenetic tree, Genus, Phylogenetics, Population, education.field_of_study, education, Gene, Evolutionary biology, Biology, Salicaceae, biology.organism_classification

LIU, X., Z. WANG, W. SHAO, Z. YE, and J. ZHANG. 2017. Phylogenetic and Taxonomic Status B.C. HUSBAND, ET AL. 2014. Understanding the spectacular failure of DNA barcoding in willows WANG, Z., S. DU, S. DAYANANDAN, D. WANG, Y. ZENG, and J. ZHANG. 2014. Phylogeny

Abstract
<jats:title>Abstract</jats:title><jats:sec><jats:title>Premise of the study</jats:title><jats:p>The family Salicaceae has proved taxonomically challenging, especially in the genus <jats:italic>Salix</jats:italic>, which is speciose and features frequent hybridization and polyploidy. Past efforts to reconstruct the phylogeny with molecular barcodes have failed to resolve the species relationships of many sections of the genus.</jats:p></jats:sec><jats:sec><jats:title>Methods</jats:title><jats:p>We used the wealth of sequence data in the family to design sequence capture probes to target regions of 300-1200 base pairs of exonic regions of 972 genes.</jats:p></jats...
Subjects
free text keywords: Locus (genetics), Population genomics, Phylogenetic tree, Genus, Phylogenetics, Population, education.field_of_study, education, Gene, Evolutionary biology, Biology, Salicaceae, biology.organism_classification

LIU, X., Z. WANG, W. SHAO, Z. YE, and J. ZHANG. 2017. Phylogenetic and Taxonomic Status B.C. HUSBAND, ET AL. 2014. Understanding the spectacular failure of DNA barcoding in willows WANG, Z., S. DU, S. DAYANANDAN, D. WANG, Y. ZENG, and J. ZHANG. 2014. Phylogeny

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