publication . Preprint . 2020

Targeted sequence capture array for phylogenetics and population genomics in the Salicaceae

Brian J. Sanderson; Brian J. Sanderson; Tao Ma; Quentin C. B. Cronk; Stephen P. DiFazio; Matthew S. Olson;
Open Access English
  • Published: 09 May 2020
  • Publisher: Cold Spring Harbor Laboratory
Abstract
<jats:title>Abstract</jats:title><jats:sec><jats:title>Premise of the study</jats:title><jats:p>The family Salicaceae has proved taxonomically challenging, especially in the genus <jats:italic>Salix</jats:italic>, which is speciose and features frequent hybridization and polyploidy. Past efforts to reconstruct the phylogeny with molecular barcodes have failed to resolve the species relationships of many sections of the genus.</jats:p></jats:sec><jats:sec><jats:title>Methods</jats:title><jats:p>We used the wealth of sequence data in the family to design sequence capture probes to target regions of 300-1200 base pairs of exonic regions of 972 genes.</jats:p></jats...
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doi: 10.1101/2020.05.08.084640
Subjects
free text keywords: Locus (genetics), Population genomics, Phylogenetic tree, Genus, Phylogenetics, Population, education.field_of_study, education, Gene, Evolutionary biology, Biology, Salicaceae, biology.organism_classification
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Funded by
NSF| Dimensions US-China: Collaborative Research: Allozomes and dioecy in plants as drivers of multi-level biodiversity
Project
Dimensions US-China: Collaborative Research: Allozomes and dioecy in plants as drivers of multi-level biodiversity
  • Funder: National Science Foundation (NSF)
  • Project Code: 1542509
, NSF| Dimensions US-China: Collaborative Research: Allosomes and dioecy in plants as drivers of multi-level biodiversity
Project
Dimensions US-China: Collaborative Research: Allosomes and dioecy in plants as drivers of multi-level biodiversity
  • Funder: National Science Foundation (NSF)
  • Project Code: 1542599
Download fromView all 2 versions
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Preprint . 2020
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Preprint . 2020
Provider: Crossref

LIU, X., Z. WANG, W. SHAO, Z. YE, and J. ZHANG. 2017. Phylogenetic and Taxonomic Status B.C. HUSBAND, ET AL. 2014. Understanding the spectacular failure of DNA barcoding in willows WANG, Z., S. DU, S. DAYANANDAN, D. WANG, Y. ZENG, and J. ZHANG. 2014. Phylogeny

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Abstract
<jats:title>Abstract</jats:title><jats:sec><jats:title>Premise of the study</jats:title><jats:p>The family Salicaceae has proved taxonomically challenging, especially in the genus <jats:italic>Salix</jats:italic>, which is speciose and features frequent hybridization and polyploidy. Past efforts to reconstruct the phylogeny with molecular barcodes have failed to resolve the species relationships of many sections of the genus.</jats:p></jats:sec><jats:sec><jats:title>Methods</jats:title><jats:p>We used the wealth of sequence data in the family to design sequence capture probes to target regions of 300-1200 base pairs of exonic regions of 972 genes.</jats:p></jats...
Read more
doi: 10.1101/2020.05.08.084640
Subjects
free text keywords: Locus (genetics), Population genomics, Phylogenetic tree, Genus, Phylogenetics, Population, education.field_of_study, education, Gene, Evolutionary biology, Biology, Salicaceae, biology.organism_classification
Related Organizations
View more
Funded by
NSF| Dimensions US-China: Collaborative Research: Allozomes and dioecy in plants as drivers of multi-level biodiversity
Project
Dimensions US-China: Collaborative Research: Allozomes and dioecy in plants as drivers of multi-level biodiversity
  • Funder: National Science Foundation (NSF)
  • Project Code: 1542509
, NSF| Dimensions US-China: Collaborative Research: Allosomes and dioecy in plants as drivers of multi-level biodiversity
Project
Dimensions US-China: Collaborative Research: Allosomes and dioecy in plants as drivers of multi-level biodiversity
  • Funder: National Science Foundation (NSF)
  • Project Code: 1542599
Download fromView all 2 versions
bioRxiv
Preprint . 2020
Provider: bioRxiv
https://www.biorxiv.org/conten...
Preprint
Provider: UnpayWall
https://www.biorxiv.org/conten...
Preprint
Provider: Microsoft Academic Graph
https://syndication.highwire.o...
Preprint . 2020
Provider: Crossref

LIU, X., Z. WANG, W. SHAO, Z. YE, and J. ZHANG. 2017. Phylogenetic and Taxonomic Status B.C. HUSBAND, ET AL. 2014. Understanding the spectacular failure of DNA barcoding in willows WANG, Z., S. DU, S. DAYANANDAN, D. WANG, Y. ZENG, and J. ZHANG. 2014. Phylogeny

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