publication . Article . 2018

Overview of Oxidative Stress Response Genes in Selected Halophilic Fungi.

Cene Gostinčar; Nina Gunde-Cimerman;
Open Access English
  • Published: 01 Mar 2018 Journal: Genes (issn: 2073-4425, Copyright policy)
  • Publisher: MDPI AG
Abstract
Exposure of microorganisms to stress, including to high concentrations of salt, can lead to increased production of reactive oxygen species in the cell. To limit the resulting damage, cells have evolved a variety of antioxidant defenses. The role of these defenses in halotolerance has been proposed before. Whole genome sequencing for some of the most halotolerant and halophilic fungal species has enabled us to investigate the possible links between oxidative and salt stress tolerance on the genomic level. We identified genes involved in oxidative stress response in the halophilic basidiomycete Wallemia ichthyophaga, and halotolerant ascomycetous black yeasts Hor...
Subjects
free text keywords: oxidative stress, reactive oxidative species, halophilic fungi, halotolerant fungi, peroxidase, catalase, Wallemia ichthyophaga, Hortaea werneckii, Aureobasidium pullulans, Genetics, QH426-470, Article, Genetics(clinical)
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50 references, page 1 of 4

saccharomyces cerevisiae. Genetics 2012, 190, 1157-1195. [CrossRef] [PubMed]

2010, 136, 295-303. [CrossRef] [PubMed]

and its relation to the inhibition of a Ca2+-dependent but calcineurin-independent mechanism in

Saccharomyces cerevisiae. J. Biosci. Bioeng. 2006, 101, 77-79. [CrossRef] [PubMed]

in plants. In Progress in Botany; Springer: Berlin/Heidelberg, Germany, 2008; Volume 69, pp. 231-245.

2003; Volume 53, ISBN 9788578110796.

2009, 7, 237-245. [CrossRef] [PubMed]

Yang, H.-Y.; Lee, T.-H. Antioxidant enzymes as redox-based biomarkers: A brief review. BMB Rep. 2015, 48,

200-208. [CrossRef] [PubMed]

8. Daly, M.J. Death by protein damage in irradiated cells. DNA Repair 2012, 11, 12-21. [CrossRef] [PubMed]

9. Sharma, A.; Gaidamakova, E.K.; Grichenko, O.; Matrosova, V.Y.; Hoeke, V.; Klimenkova, P.; Conze, I.H.; Volpe, R.P.; Tkavc, R.; Gostincˇar, C.; et al. Across the tree of life, radiation resistance is governed by antioxidant Mn2+, gauged by paramagnetic resonance. Proc. Natl. Acad. Sci. USA 2017, 114, E9253-E9260. [CrossRef] [PubMed] [OpenAIRE]

10. Makarova, K.S.; Omelchenko, M.V.; Gaidamakova, E.K.; Matrosova, V.Y.; Vasilenko, A.; Zhai, M.; Lapidus, A.; Copeland, A.; Kim, E.; Land, M.; et al. Deinococcus geothermalis: The pool of extreme radiation resistance genes shrinks. PLoS ONE 2007, 2, e955. [CrossRef] [PubMed] [OpenAIRE]

11. Tanaka, M.; Earl, A.M.; Howell, H.A.; Park, M.J.; Eisen, J.A.; Peterson, S.N.; Battista, J.R. Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance. Genetics 2004, 168, 21-33. [CrossRef] [PubMed]

12. Gostincˇar, C.; Lenassi, M.; Gunde-Cimerman, N.; Plemenitaš, A. Fungal adaptation to extremely high salt concentrations. Adv. Appl. Microbiol. 2011, 77, 71-96. [CrossRef] [PubMed]

13. Nguyen, H.D.T.; Jancic, S.; Meijer, M.; Tanney, J.B.; Zalar, P.; Gunde-Cimerman, N.; Seifert, K.A. Application of the phylogenetic species concept to Wallemia sebi from house dust and indoor air revealed by multi-locus genealogical concordance. PLoS ONE 2015, 10, e0120894. [CrossRef] [PubMed]

50 references, page 1 of 4
Abstract
Exposure of microorganisms to stress, including to high concentrations of salt, can lead to increased production of reactive oxygen species in the cell. To limit the resulting damage, cells have evolved a variety of antioxidant defenses. The role of these defenses in halotolerance has been proposed before. Whole genome sequencing for some of the most halotolerant and halophilic fungal species has enabled us to investigate the possible links between oxidative and salt stress tolerance on the genomic level. We identified genes involved in oxidative stress response in the halophilic basidiomycete Wallemia ichthyophaga, and halotolerant ascomycetous black yeasts Hor...
Subjects
free text keywords: oxidative stress, reactive oxidative species, halophilic fungi, halotolerant fungi, peroxidase, catalase, Wallemia ichthyophaga, Hortaea werneckii, Aureobasidium pullulans, Genetics, QH426-470, Article, Genetics(clinical)
Download fromView all 3 versions
Genes
Article . 2018
Genes
Article . 2018
Provider: Crossref
Genes
Article
Provider: UnpayWall
50 references, page 1 of 4

saccharomyces cerevisiae. Genetics 2012, 190, 1157-1195. [CrossRef] [PubMed]

2010, 136, 295-303. [CrossRef] [PubMed]

and its relation to the inhibition of a Ca2+-dependent but calcineurin-independent mechanism in

Saccharomyces cerevisiae. J. Biosci. Bioeng. 2006, 101, 77-79. [CrossRef] [PubMed]

in plants. In Progress in Botany; Springer: Berlin/Heidelberg, Germany, 2008; Volume 69, pp. 231-245.

2003; Volume 53, ISBN 9788578110796.

2009, 7, 237-245. [CrossRef] [PubMed]

Yang, H.-Y.; Lee, T.-H. Antioxidant enzymes as redox-based biomarkers: A brief review. BMB Rep. 2015, 48,

200-208. [CrossRef] [PubMed]

8. Daly, M.J. Death by protein damage in irradiated cells. DNA Repair 2012, 11, 12-21. [CrossRef] [PubMed]

9. Sharma, A.; Gaidamakova, E.K.; Grichenko, O.; Matrosova, V.Y.; Hoeke, V.; Klimenkova, P.; Conze, I.H.; Volpe, R.P.; Tkavc, R.; Gostincˇar, C.; et al. Across the tree of life, radiation resistance is governed by antioxidant Mn2+, gauged by paramagnetic resonance. Proc. Natl. Acad. Sci. USA 2017, 114, E9253-E9260. [CrossRef] [PubMed] [OpenAIRE]

10. Makarova, K.S.; Omelchenko, M.V.; Gaidamakova, E.K.; Matrosova, V.Y.; Vasilenko, A.; Zhai, M.; Lapidus, A.; Copeland, A.; Kim, E.; Land, M.; et al. Deinococcus geothermalis: The pool of extreme radiation resistance genes shrinks. PLoS ONE 2007, 2, e955. [CrossRef] [PubMed] [OpenAIRE]

11. Tanaka, M.; Earl, A.M.; Howell, H.A.; Park, M.J.; Eisen, J.A.; Peterson, S.N.; Battista, J.R. Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance. Genetics 2004, 168, 21-33. [CrossRef] [PubMed]

12. Gostincˇar, C.; Lenassi, M.; Gunde-Cimerman, N.; Plemenitaš, A. Fungal adaptation to extremely high salt concentrations. Adv. Appl. Microbiol. 2011, 77, 71-96. [CrossRef] [PubMed]

13. Nguyen, H.D.T.; Jancic, S.; Meijer, M.; Tanney, J.B.; Zalar, P.; Gunde-Cimerman, N.; Seifert, K.A. Application of the phylogenetic species concept to Wallemia sebi from house dust and indoor air revealed by multi-locus genealogical concordance. PLoS ONE 2015, 10, e0120894. [CrossRef] [PubMed]

50 references, page 1 of 4
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