publication . Article . Other literature type . 2009

CentroidFold: a web server for RNA secondary structure prediction

Toutai Mituyama; Michiaki Hamada; Kiyoshi Asai; Kiyoshi Asai; Kengo Sato;
Open Access English
  • Published: 12 May 2009 Journal: Nucleic Acids Research, volume 37, issue Web Server issue, pages W277-W280 (issn: 0305-1048, eissn: 1362-4962, Copyright policy)
  • Publisher: Oxford University Press
The CENTROIDFOLD web server ( centroidfold/) is a web application for RNA secondary structure prediction powered by one of the most accurate prediction engine. The server accepts two kinds of sequence data: a single RNA sequence and a multiple alignment of RNA sequences. It responses with a prediction result shown as a popular base-pair notation and a graph representation. PDF version of the graph representation is also available. For a multiple alignment sequence, the server predicts a common secondary structure. Usage of the server is quite simple. You can paste a single RNA sequence (FASTA or plain sequence text) or a multiple alignment (...
free text keywords: Articles, Genetics, Bioinformatics, Login, Web server, computer.software_genre, computer, Data mining, Multiple sequence alignment, Software, business.industry, business, Graph (abstract data type), Web application, Server Side Includes, Biology, Web log analysis software

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