publication . Article . 2007

RAD marker microarrays enable rapid mapping of zebrafish mutations.

John H. Postlethwait; Eric A. Johnson; B. Frank Eames; Michael R. Miller; Yi-Lin Yan; Johann K. Eberhart; Tressa S. Atwood;
Open Access English
  • Published: 01 Jun 2007 Journal: Genome Biology, volume 8, issue 6, page R105 (issn: 1465-6906, Copyright policy)
  • Publisher: Springer Nature
Abstract
A RAD marker microarray was constructed to facilitate rapid genetic mapping of zebrafish mutations and used to localize previously unmapped mutations to genomic regions just a few centiMorgans in length.
Subjects
free text keywords: Method, Gene mapping, Restriction map, Biology, Human genetics, Zebrafish, biology.organism_classification, Genetics, Microarray, Restriction site, DNA microarray, Mutation, medicine.disease_cause, medicine
Related Organizations
Funded by
NIH| Resources for Teleost Gene Duplicates and Human Disease
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 5R01RR020833-02
  • Funding stream: NATIONAL CENTER FOR RESEARCH RESOURCES
29 references, page 1 of 2

Ackermann, GE, Paw, BH. Zebrafish: a genetic model for vertebrate organogenesis and human disorders.. Front Biosci. 2003; 8: d1227-d1253 [OpenAIRE] [PubMed] [DOI]

Berghmans, S, Jette, C, Langenau, D, Hsu, K, Stewart, R, Look, T, Kanki, JP. Making waves in cancer research: new models in the zebrafish.. Biotechniques. 2005; 39: 227-237 [OpenAIRE] [PubMed]

Chen, E, Ekker, SC. Zebrafish as a genomics research model.. Curr Pharm Biotechnol. 2004; 5: 409-413 [OpenAIRE] [PubMed] [DOI]

Goldsmith, P. Zebrafish as a pharmacological tool: the how, why and when.. Curr Opin Pharmacol. 2004; 4: 504-512 [OpenAIRE] [PubMed] [DOI]

Love, DR, Pichler, FB, Dodd, A, Copp, BR, Greenwood, DR. Technology for high-throughput screens: the present and future using zebrafish.. Curr Opin Biotechnol. 2004; 15: 564-571 [OpenAIRE] [PubMed] [DOI]

Streisinger, G, Walker, C, Dower, N, Knauber, D, Singer, F. Production of clones of homozygous diploid zebra fish (Brachydanio rerio).. Nature. 1981; 291: 293-296 [OpenAIRE] [PubMed] [DOI]

Mullins, MC, Hammerschmidt, M, Haffter, P, Nusslein-Volhard, C. Large-scale mutagenesis in the zebrafish: in search of genes controlling development in a vertebrate.. Curr Biol. 1994; 4: 189-202 [OpenAIRE] [PubMed] [DOI]

Postlethwait, JH, Johnson, SL, Midson, CN, Talbot, WS, Gates, M, Ballinger, EW, Africa, D, Andrews, R, Carl, T, Eisen, JS. A genetic linkage map for the zebrafish.. Science. 1994; 264: 699-703 [OpenAIRE] [PubMed] [DOI]

Driever, W, Solnica-Krezel, L, Schier, AF, Neuhauss, SC, Malicki, J, Stemple, DL, Stainier, DY, Zwartkruis, F, Abdelilah, S, Rangini, Z. A genetic screen for mutations affecting embryogenesis in zebrafish.. Development. 1996; 123: 37-46 [OpenAIRE] [PubMed]

Haffter, P, Granato, M, Brand, M, Mullins, MC, Hammerschmidt, M, Kane, DA, Odenthal, J, van Eeden, FJ, Jiang, YJ, Heisenberg, CP. The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio.. Development. 1996; 123: 1-36 [OpenAIRE] [PubMed]

ZFIN: the Zebrafish Model Organism Database.

Stickney, HL, Schmutz, J, Woods, IG, Holtzer, CC, Dickson, MC, Kelly, PD, Myers, RM, Talbot, WS. Rapid mapping of zebrafish mutations with SNPs and oligonucleotide microarrays.. Genome Res. 2002; 12: 1929-1934 [OpenAIRE] [PubMed] [DOI]

Shimoda, N, Knapik, EW, Ziniti, J, Sim, C, Yamada, E, Kaplan, S, Jackson, D, de Sauvage, F, Jacob, H, Fishman, MC. Zebrafish genetic map with 2000 microsatellite markers.. Genomics. 1999; 58: 219-232 [OpenAIRE] [PubMed] [DOI]

Bahary, N, Davidson, A, Ransom, D, Shepard, J, Stern, H, Trede, N, Zhou, Y, Barut, B, Zon, LI. The Zon laboratory guide to positional cloning in zebrafish.. Methods Cell Biol. 2004; 77: 305-329 [PubMed]

Miller, MR, Dunham, JP, Amores, A, Cresko, WA, Johnson, EA. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers.. Genome Res. 2007; 17: 240-248 [OpenAIRE] [PubMed] [DOI]

29 references, page 1 of 2
Abstract
A RAD marker microarray was constructed to facilitate rapid genetic mapping of zebrafish mutations and used to localize previously unmapped mutations to genomic regions just a few centiMorgans in length.
Subjects
free text keywords: Method, Gene mapping, Restriction map, Biology, Human genetics, Zebrafish, biology.organism_classification, Genetics, Microarray, Restriction site, DNA microarray, Mutation, medicine.disease_cause, medicine
Related Organizations
Funded by
NIH| Resources for Teleost Gene Duplicates and Human Disease
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 5R01RR020833-02
  • Funding stream: NATIONAL CENTER FOR RESEARCH RESOURCES
29 references, page 1 of 2

Ackermann, GE, Paw, BH. Zebrafish: a genetic model for vertebrate organogenesis and human disorders.. Front Biosci. 2003; 8: d1227-d1253 [OpenAIRE] [PubMed] [DOI]

Berghmans, S, Jette, C, Langenau, D, Hsu, K, Stewart, R, Look, T, Kanki, JP. Making waves in cancer research: new models in the zebrafish.. Biotechniques. 2005; 39: 227-237 [OpenAIRE] [PubMed]

Chen, E, Ekker, SC. Zebrafish as a genomics research model.. Curr Pharm Biotechnol. 2004; 5: 409-413 [OpenAIRE] [PubMed] [DOI]

Goldsmith, P. Zebrafish as a pharmacological tool: the how, why and when.. Curr Opin Pharmacol. 2004; 4: 504-512 [OpenAIRE] [PubMed] [DOI]

Love, DR, Pichler, FB, Dodd, A, Copp, BR, Greenwood, DR. Technology for high-throughput screens: the present and future using zebrafish.. Curr Opin Biotechnol. 2004; 15: 564-571 [OpenAIRE] [PubMed] [DOI]

Streisinger, G, Walker, C, Dower, N, Knauber, D, Singer, F. Production of clones of homozygous diploid zebra fish (Brachydanio rerio).. Nature. 1981; 291: 293-296 [OpenAIRE] [PubMed] [DOI]

Mullins, MC, Hammerschmidt, M, Haffter, P, Nusslein-Volhard, C. Large-scale mutagenesis in the zebrafish: in search of genes controlling development in a vertebrate.. Curr Biol. 1994; 4: 189-202 [OpenAIRE] [PubMed] [DOI]

Postlethwait, JH, Johnson, SL, Midson, CN, Talbot, WS, Gates, M, Ballinger, EW, Africa, D, Andrews, R, Carl, T, Eisen, JS. A genetic linkage map for the zebrafish.. Science. 1994; 264: 699-703 [OpenAIRE] [PubMed] [DOI]

Driever, W, Solnica-Krezel, L, Schier, AF, Neuhauss, SC, Malicki, J, Stemple, DL, Stainier, DY, Zwartkruis, F, Abdelilah, S, Rangini, Z. A genetic screen for mutations affecting embryogenesis in zebrafish.. Development. 1996; 123: 37-46 [OpenAIRE] [PubMed]

Haffter, P, Granato, M, Brand, M, Mullins, MC, Hammerschmidt, M, Kane, DA, Odenthal, J, van Eeden, FJ, Jiang, YJ, Heisenberg, CP. The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio.. Development. 1996; 123: 1-36 [OpenAIRE] [PubMed]

ZFIN: the Zebrafish Model Organism Database.

Stickney, HL, Schmutz, J, Woods, IG, Holtzer, CC, Dickson, MC, Kelly, PD, Myers, RM, Talbot, WS. Rapid mapping of zebrafish mutations with SNPs and oligonucleotide microarrays.. Genome Res. 2002; 12: 1929-1934 [OpenAIRE] [PubMed] [DOI]

Shimoda, N, Knapik, EW, Ziniti, J, Sim, C, Yamada, E, Kaplan, S, Jackson, D, de Sauvage, F, Jacob, H, Fishman, MC. Zebrafish genetic map with 2000 microsatellite markers.. Genomics. 1999; 58: 219-232 [OpenAIRE] [PubMed] [DOI]

Bahary, N, Davidson, A, Ransom, D, Shepard, J, Stern, H, Trede, N, Zhou, Y, Barut, B, Zon, LI. The Zon laboratory guide to positional cloning in zebrafish.. Methods Cell Biol. 2004; 77: 305-329 [PubMed]

Miller, MR, Dunham, JP, Amores, A, Cresko, WA, Johnson, EA. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers.. Genome Res. 2007; 17: 240-248 [OpenAIRE] [PubMed] [DOI]

29 references, page 1 of 2
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