publication . Article . Other literature type . 2010

Genome sequence of the pea aphid Acyrthosiphon pisum

David Stern;
Open Access English
  • Published: 23 Feb 2010
Abstract
The genome of the pea aphid shows remarkable levels of gene duplication and equally remarkable gene absences that shed light on aspects of aphid biology, most especially its symbiosis with Buchnera.
Subjects
Medical Subject Headings: biochemical phenomena, metabolism, and nutritionfood and beverages
free text keywords: Genètica animal, Genètica microbiana, Sequència genòmica, Afídids, Annotation; Aphid; Genome sequence, Biology and Life Sciences, SOCIAL INSECT, PHEROMONE-BINDING, SYMBIOTIC BACTERIA, GENE-EXPRESSION, REPETITIVE ELEMENTS, DROSOPHILA CIRCADIAN CLOCK, CPG METHYLATION, DNA-SEQUENCES, TANDEM REPEATS, APIS-MELLIFERA, Gene Transfer, Horizontal, Genome, Insect, International Aphid Genomics Consortium, Biological Sciences, Agricultural and Veterinary Sciences, Medical and Health Sciences, Developmental Biology, Biologiska vetenskaper, RRES175, 175_Genetics, 175_Entomology, Animals, Aphids, Buchnera, Gene Transfer, Horizontal, Genome, Insect, Symbiosis, Faculty of Science\Computer Science, GENOME SEQUENCE, PEA APHID, ACYRTHOSIPHON PISUM, VIRUS VECTORING, PHENOTYPIC PLASTICITY, HOLOMETABOLOUS INSECTS, INSECT-PLANT, HOST-PLANT, INSECTE, RAVAGEUR DES CULTURES, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis, GENOME SEQUENCE;PEA APHID;ACYRTHOSIPHON PISUM;INSECT-PLANT;HOST-PLANT;VIRUS VECTORING;PHENOTYPIC PLASTICITY;HOLOMETABOLOUS INSECTS;INSECTE;RAVAGEUR DES CULTURES; , génome, symbiose, gène, puceron, Biology (General), QH301-705.5, [SDV]Life Sciences [q-bio], Research Article, Genetics and Genomics/Genome Projects, Genetics and Genomics/Microbial Evolution and Genomics
130 references, page 1 of 9

1. Blackman RL, Eastop VF Aphids on the world's crops: an identification and information guide. Wiley, John & Sons, Incorporated. 476 p.

2. Morrison WP, Peairs FB (1998) Response model concept and economic impact. In: Quisenberry SS, Peairs FB, eds. Response model for an introduced pest-the Russian wheat aphid. Lanham, MD: Entomological Society of America.

3. Oerke E-C (1994) Estimated crop losses in wheat. In: Oerke E-C, Dehne H-W, Schonbeck F, Weber A, eds. Crop production and crop protection: estimated losses in major food and cash crops. Amsterdam: Elsevier, 179-296.

4. Moran NA, Munson MA, Baumann P, Ishikawa H (1993) A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts. Proc: Biol Sci 253: 167-171.

5. Akman Gunduz E, Douglas AE (2009) Symbiotic bacteria enable insect to use a nutritionally inadequate diet. Proc R Soc Lond, Ser B: Bio Sci 276: 987-991.

6. Oliver KM, Degnan PH, Burke GR, Moran NA (2009) Facultative symbionts of aphids and the horizontal transfer of ecologically important traits. Annu Rev Entomol 55.

7. von Dohlen CD, Rowe CA, Heie OE (2006) A test of morphological hypotheses for tribal and subtribal relationships of Aphidinae (Insecta: Hemiptera: Aphididae) using DNA sequences. Mol Phylogenet Evol 38: 316-329.

8. Degnan PH, Leonardo TE, Cass B, Hurwitz B, Richards S, et al. (2009) Dynamics of genome evolution in faculatitve symbionts of aphids. Environ Microbiol - in press.

9. Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA (2009) Hamiltonella defensa, genome evolution of a protective bacterial endosymbiont from pathogenic ancestors. Proc Natl Acad Sci U S A 106: 9063-9068.

10. Shigenobu S, Watanabe H, Hattori M, Sakaki Y, Ishikawa H (2000) Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407: 81-86. [OpenAIRE]

11. Brisson JA, Ishiawa A, Miura T (2010) Wing development genes of the pea aphid and differential gene expression between winged and unwinged morphs. Insect Mol Biol (doi: 10.1111/j.1365-2583.2009.00935.x).

12. Carolan JC, Fitzroy CIJ, Ashton PD, Douglas AE, Wilkinson TL (2009) The secreted salivary proteome of the pea aphid Acyrthosiphon pisum characterised by mass spectrometry. Proteomics 9: 2457-2467. [OpenAIRE]

13. Christiaens O, Iga M, Velarde RA, Rouge´ P, Smaggh G (2010) Halloween genes and nuclear receptors in ecdysteroid biosynthesis and signaling in the pea aphid. Insect Mol Biol (doi: 10.1111/j.1365-2583.2009.00957.x). [OpenAIRE]

14. Corte´s T, Ortiz-Rivas B, Mart´ınez-Torres D (2010) Identification and characterization of circadian clock genes in the pea aphid Acrythosiphon pisum. Insect Mol Biol (doi: 10.1111/j.1365-2583.2009.00931.x).

15. Dale RP, Walsh T, Tamborindeguy C, Davies TGE, Amey JS, et al. (2010) Identification of ion channel genes in the Acyrthosiphon pisum genome. Insect Mol Biol - in press. [OpenAIRE]

130 references, page 1 of 9
Abstract
The genome of the pea aphid shows remarkable levels of gene duplication and equally remarkable gene absences that shed light on aspects of aphid biology, most especially its symbiosis with Buchnera.
Subjects
Medical Subject Headings: biochemical phenomena, metabolism, and nutritionfood and beverages
free text keywords: Genètica animal, Genètica microbiana, Sequència genòmica, Afídids, Annotation; Aphid; Genome sequence, Biology and Life Sciences, SOCIAL INSECT, PHEROMONE-BINDING, SYMBIOTIC BACTERIA, GENE-EXPRESSION, REPETITIVE ELEMENTS, DROSOPHILA CIRCADIAN CLOCK, CPG METHYLATION, DNA-SEQUENCES, TANDEM REPEATS, APIS-MELLIFERA, Gene Transfer, Horizontal, Genome, Insect, International Aphid Genomics Consortium, Biological Sciences, Agricultural and Veterinary Sciences, Medical and Health Sciences, Developmental Biology, Biologiska vetenskaper, RRES175, 175_Genetics, 175_Entomology, Animals, Aphids, Buchnera, Gene Transfer, Horizontal, Genome, Insect, Symbiosis, Faculty of Science\Computer Science, GENOME SEQUENCE, PEA APHID, ACYRTHOSIPHON PISUM, VIRUS VECTORING, PHENOTYPIC PLASTICITY, HOLOMETABOLOUS INSECTS, INSECT-PLANT, HOST-PLANT, INSECTE, RAVAGEUR DES CULTURES, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis, GENOME SEQUENCE;PEA APHID;ACYRTHOSIPHON PISUM;INSECT-PLANT;HOST-PLANT;VIRUS VECTORING;PHENOTYPIC PLASTICITY;HOLOMETABOLOUS INSECTS;INSECTE;RAVAGEUR DES CULTURES; , génome, symbiose, gène, puceron, Biology (General), QH301-705.5, [SDV]Life Sciences [q-bio], Research Article, Genetics and Genomics/Genome Projects, Genetics and Genomics/Microbial Evolution and Genomics
130 references, page 1 of 9

1. Blackman RL, Eastop VF Aphids on the world's crops: an identification and information guide. Wiley, John & Sons, Incorporated. 476 p.

2. Morrison WP, Peairs FB (1998) Response model concept and economic impact. In: Quisenberry SS, Peairs FB, eds. Response model for an introduced pest-the Russian wheat aphid. Lanham, MD: Entomological Society of America.

3. Oerke E-C (1994) Estimated crop losses in wheat. In: Oerke E-C, Dehne H-W, Schonbeck F, Weber A, eds. Crop production and crop protection: estimated losses in major food and cash crops. Amsterdam: Elsevier, 179-296.

4. Moran NA, Munson MA, Baumann P, Ishikawa H (1993) A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts. Proc: Biol Sci 253: 167-171.

5. Akman Gunduz E, Douglas AE (2009) Symbiotic bacteria enable insect to use a nutritionally inadequate diet. Proc R Soc Lond, Ser B: Bio Sci 276: 987-991.

6. Oliver KM, Degnan PH, Burke GR, Moran NA (2009) Facultative symbionts of aphids and the horizontal transfer of ecologically important traits. Annu Rev Entomol 55.

7. von Dohlen CD, Rowe CA, Heie OE (2006) A test of morphological hypotheses for tribal and subtribal relationships of Aphidinae (Insecta: Hemiptera: Aphididae) using DNA sequences. Mol Phylogenet Evol 38: 316-329.

8. Degnan PH, Leonardo TE, Cass B, Hurwitz B, Richards S, et al. (2009) Dynamics of genome evolution in faculatitve symbionts of aphids. Environ Microbiol - in press.

9. Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA (2009) Hamiltonella defensa, genome evolution of a protective bacterial endosymbiont from pathogenic ancestors. Proc Natl Acad Sci U S A 106: 9063-9068.

10. Shigenobu S, Watanabe H, Hattori M, Sakaki Y, Ishikawa H (2000) Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407: 81-86. [OpenAIRE]

11. Brisson JA, Ishiawa A, Miura T (2010) Wing development genes of the pea aphid and differential gene expression between winged and unwinged morphs. Insect Mol Biol (doi: 10.1111/j.1365-2583.2009.00935.x).

12. Carolan JC, Fitzroy CIJ, Ashton PD, Douglas AE, Wilkinson TL (2009) The secreted salivary proteome of the pea aphid Acyrthosiphon pisum characterised by mass spectrometry. Proteomics 9: 2457-2467. [OpenAIRE]

13. Christiaens O, Iga M, Velarde RA, Rouge´ P, Smaggh G (2010) Halloween genes and nuclear receptors in ecdysteroid biosynthesis and signaling in the pea aphid. Insect Mol Biol (doi: 10.1111/j.1365-2583.2009.00957.x). [OpenAIRE]

14. Corte´s T, Ortiz-Rivas B, Mart´ınez-Torres D (2010) Identification and characterization of circadian clock genes in the pea aphid Acrythosiphon pisum. Insect Mol Biol (doi: 10.1111/j.1365-2583.2009.00931.x).

15. Dale RP, Walsh T, Tamborindeguy C, Davies TGE, Amey JS, et al. (2010) Identification of ion channel genes in the Acyrthosiphon pisum genome. Insect Mol Biol - in press. [OpenAIRE]

130 references, page 1 of 9
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