publication . Preprint . Article . Other literature type . 2019

Comparative genomics of Alternaria species provides insights into the pathogenic lifestyle of Alternaria brassicae – a pathogen of the Brassicaceae family

Sivasubramanian Rajarammohan; Kumar Paritosh; Deepak Pental; Jagreet Kaur;
Open Access English
  • Published: 05 Jul 2019
  • Publisher: Cold Spring Harbor Laboratory
Abstract
<jats:title>Abstract</jats:title><jats:p><jats:italic>Alternaria brassicae</jats:italic>, a necrotrophic pathogen, causes <jats:italic>Alternaria</jats:italic> Leaf Spot, one of the economically important diseases of <jats:italic>Brassica</jats:italic> crops. Many other <jats:italic>Alternaria spp.</jats:italic> such as <jats:italic>A. brassicicola</jats:italic> and <jats:italic>A. alternata</jats:italic> are known to cause secondary infections in the <jats:italic>A. brassicae</jats:italic>-infected Brassicas. The genome architecture, pathogenicity factors, and determinants of host-specificity of <jats:italic>A. brassicae</jats:italic> are unknown. In this study...
Subjects
free text keywords: Biotechnology, Genetics, Research Article, Alternaria spp., Comparative genomics, Destruxin B, Dispensable chromosome, Necrotroph, TP248.13-248.65, QH426-470
Download fromView all 7 versions
bioRxiv
Preprint . 2019
Provider: bioRxiv
BMC Genomics
Article . 2019
Provider: Crossref
52 references, page 1 of 4

1.Nowicki M, Nowakowska M, Niezgod a A, Kozik E. Alternaria Black Spot of Crucifers: Symptoms, Importance of Disease, and Perspectives of Resistance Breeding. Vege Crops Res Bullet. 2012;76(1):5.

Sharma, G, Dinesh Kumar, V, Haque, A, Bhat, SR, Prakash, S, Chopra, VL. Brassica coenospecies: a rich reservoir for genetic resistance to leaf spot caused by Alternaria brassicae. Euphytica. 2002; 125 (3): 411-417 [DOI]

Nishimura, S, Kohmoto, K. Host-specific toxins and chemical structures from Alternaria species. Annu Rev Phytopathol. 1983; 21: 87-116 [OpenAIRE] [PubMed] [DOI]

Akagi, Y, Akamatsu, H, Otani, H, Kodama, M. Horizontal chromosome transfer, a mechanism for the evolution and differentiation of a plant-pathogenic fungus. Eukaryot Cell. 2009; 8 (11): 1732-1738 [OpenAIRE] [PubMed] [DOI]

Bains, PS, Tewari, JP. Purification, chemical characterization and host-specificity of the toxin produced by Alternaria brassicae. Physiol Mol Plant Pathol. 1987; 30 (2): 259-271 [OpenAIRE] [DOI]

BUCHWALDT, L, GREEN, H. Phytotoxicity of destruxin B and its possible role in the pathogenesis of Alternaria brassicae. Plant Pathol. 1992; 41 (1): 55-63 [OpenAIRE] [DOI]

Parada, RY, Sakuno, E, Mori, N, Oka, K, Egusa, M, Kodama, M, Otani, H. Alternaria brassicae produces a host-specific protein toxin from germinating spores on host leaves. Phytopathology. 2008; 98 (4): 458-463 [OpenAIRE] [PubMed] [DOI]

Woudenberg, JH, Groenewald, JZ, Binder, M, Crous, PW. Alternaria redefined. Stud Mycol. 2013; 75 (1): 171-212 [OpenAIRE] [PubMed] [DOI]

Thomma, B, Seidl, MF, Shi-Kunne, X, Cook, DE, Bolton, MD, van Kan, JAL, Faino, L. Mind the gap; seven reasons to close fragmented genome assemblies. Fungal Genet Biol. 2016; 90: 24-30 [OpenAIRE] [PubMed] [DOI]

Rajarammohan, Sivasubramanian, Pental, Deepak, Kaur, Jagreet. Near-Complete Genome Assembly of Alternaria brassicae—A Necrotrophic Pathogen of Brassica Crops. Molecular Plant-Microbe Interactions. 2019; 32 (8): 928-930 [OpenAIRE] [PubMed] [DOI]

Belmas, Elodie, Briand, Martial, Kwasiborski, Anthony, Colou, Justine, N’Guyen, Guillaume, Iacomi, Béatrice, Grappin, Philippe, Campion, Claire, Simoneau, Philippe, Barret, Matthieu, Guillemette, Thomas. Genome Sequence of the Necrotrophic Plant Pathogen Alternaria brassicicola Abra43. Genome Announcements. 2018; 6 (6): e01559-17 [OpenAIRE] [PubMed] [DOI]

12.Nguyen HD, Lewis CT, Levesque CA, Grafenhan T. Draft Genome Sequence of Alternaria alternata ATCC 34957. Genome Announc. 2016;4(1):e01554–15.

Wolters, PJ, Faino, L, van den Bosch, TBM, Evenhuis, B, Visser, RGF, Seidl, MF, Vleeshouwers, V. Gapless genome assembly of the potato and tomato early blight pathogen Alternaria solani. Mol Plant-Microbe Interact. 2018; 31 (7): 692-694 [OpenAIRE] [PubMed] [DOI]

Liao, M, Chen, C, Li, Q. The complete mitochondrial genome of Alternaria alternata (Hypocreales: Nectriaceae). Mitochondrial DNA Part B. 2017; 2 (2): 587-588 [OpenAIRE] [DOI]

Salichos, L, Rokas, A. Inferring ancient divergences requires genes with strong phylogenetic signals. Nature. 2013; 497 (7449): 327-331 [OpenAIRE] [PubMed] [DOI]

52 references, page 1 of 4
Abstract
<jats:title>Abstract</jats:title><jats:p><jats:italic>Alternaria brassicae</jats:italic>, a necrotrophic pathogen, causes <jats:italic>Alternaria</jats:italic> Leaf Spot, one of the economically important diseases of <jats:italic>Brassica</jats:italic> crops. Many other <jats:italic>Alternaria spp.</jats:italic> such as <jats:italic>A. brassicicola</jats:italic> and <jats:italic>A. alternata</jats:italic> are known to cause secondary infections in the <jats:italic>A. brassicae</jats:italic>-infected Brassicas. The genome architecture, pathogenicity factors, and determinants of host-specificity of <jats:italic>A. brassicae</jats:italic> are unknown. In this study...
Subjects
free text keywords: Biotechnology, Genetics, Research Article, Alternaria spp., Comparative genomics, Destruxin B, Dispensable chromosome, Necrotroph, TP248.13-248.65, QH426-470
Download fromView all 7 versions
bioRxiv
Preprint . 2019
Provider: bioRxiv
BMC Genomics
Article . 2019
Provider: Crossref
52 references, page 1 of 4

1.Nowicki M, Nowakowska M, Niezgod a A, Kozik E. Alternaria Black Spot of Crucifers: Symptoms, Importance of Disease, and Perspectives of Resistance Breeding. Vege Crops Res Bullet. 2012;76(1):5.

Sharma, G, Dinesh Kumar, V, Haque, A, Bhat, SR, Prakash, S, Chopra, VL. Brassica coenospecies: a rich reservoir for genetic resistance to leaf spot caused by Alternaria brassicae. Euphytica. 2002; 125 (3): 411-417 [DOI]

Nishimura, S, Kohmoto, K. Host-specific toxins and chemical structures from Alternaria species. Annu Rev Phytopathol. 1983; 21: 87-116 [OpenAIRE] [PubMed] [DOI]

Akagi, Y, Akamatsu, H, Otani, H, Kodama, M. Horizontal chromosome transfer, a mechanism for the evolution and differentiation of a plant-pathogenic fungus. Eukaryot Cell. 2009; 8 (11): 1732-1738 [OpenAIRE] [PubMed] [DOI]

Bains, PS, Tewari, JP. Purification, chemical characterization and host-specificity of the toxin produced by Alternaria brassicae. Physiol Mol Plant Pathol. 1987; 30 (2): 259-271 [OpenAIRE] [DOI]

BUCHWALDT, L, GREEN, H. Phytotoxicity of destruxin B and its possible role in the pathogenesis of Alternaria brassicae. Plant Pathol. 1992; 41 (1): 55-63 [OpenAIRE] [DOI]

Parada, RY, Sakuno, E, Mori, N, Oka, K, Egusa, M, Kodama, M, Otani, H. Alternaria brassicae produces a host-specific protein toxin from germinating spores on host leaves. Phytopathology. 2008; 98 (4): 458-463 [OpenAIRE] [PubMed] [DOI]

Woudenberg, JH, Groenewald, JZ, Binder, M, Crous, PW. Alternaria redefined. Stud Mycol. 2013; 75 (1): 171-212 [OpenAIRE] [PubMed] [DOI]

Thomma, B, Seidl, MF, Shi-Kunne, X, Cook, DE, Bolton, MD, van Kan, JAL, Faino, L. Mind the gap; seven reasons to close fragmented genome assemblies. Fungal Genet Biol. 2016; 90: 24-30 [OpenAIRE] [PubMed] [DOI]

Rajarammohan, Sivasubramanian, Pental, Deepak, Kaur, Jagreet. Near-Complete Genome Assembly of Alternaria brassicae—A Necrotrophic Pathogen of Brassica Crops. Molecular Plant-Microbe Interactions. 2019; 32 (8): 928-930 [OpenAIRE] [PubMed] [DOI]

Belmas, Elodie, Briand, Martial, Kwasiborski, Anthony, Colou, Justine, N’Guyen, Guillaume, Iacomi, Béatrice, Grappin, Philippe, Campion, Claire, Simoneau, Philippe, Barret, Matthieu, Guillemette, Thomas. Genome Sequence of the Necrotrophic Plant Pathogen Alternaria brassicicola Abra43. Genome Announcements. 2018; 6 (6): e01559-17 [OpenAIRE] [PubMed] [DOI]

12.Nguyen HD, Lewis CT, Levesque CA, Grafenhan T. Draft Genome Sequence of Alternaria alternata ATCC 34957. Genome Announc. 2016;4(1):e01554–15.

Wolters, PJ, Faino, L, van den Bosch, TBM, Evenhuis, B, Visser, RGF, Seidl, MF, Vleeshouwers, V. Gapless genome assembly of the potato and tomato early blight pathogen Alternaria solani. Mol Plant-Microbe Interact. 2018; 31 (7): 692-694 [OpenAIRE] [PubMed] [DOI]

Liao, M, Chen, C, Li, Q. The complete mitochondrial genome of Alternaria alternata (Hypocreales: Nectriaceae). Mitochondrial DNA Part B. 2017; 2 (2): 587-588 [OpenAIRE] [DOI]

Salichos, L, Rokas, A. Inferring ancient divergences requires genes with strong phylogenetic signals. Nature. 2013; 497 (7449): 327-331 [OpenAIRE] [PubMed] [DOI]

52 references, page 1 of 4
Powered by OpenAIRE Research Graph
Any information missing or wrong?Report an Issue