publication . Article . 2017

Patterns of genetic, phenotypic, and acoustic variation across a chiffchaff (Phylloscopus collybita abietinus/tristis) hybrid zone

Daria Shipilina; Niclas Backström;
Open Access
  • Published: 02 Mar 2017 Journal: Ecology and Evolution, volume 7, pages 2,169-2,180 (issn: 2045-7758, Copyright policy)
  • Publisher: Wiley
  • Country: Sweden
Abstract
Abstract Characterizing patterns of evolution of genetic and phenotypic divergence between incipient species is essential to understand how evolution of reproductive isolation proceeds. Hybrid zones are excellent for studying such processes, as they provide opportunities to assess trait variation in individuals with mixed genetic background and to quantify gene flow across different genomic regions. Here, we combine plumage, song, mtDNA and whole‐genome sequence data and analyze variation across a sympatric zone between the European and the Siberian chiffchaff (Phylloscopus collybita abietinus/tristis) to study how gene exchange between the lineages affects trai...
Subjects
free text keywords: Ekologi, Evolutionary Biology, Evolutionsbiologi, Ecology, Ecology, Evolution, Behavior and Systematics, Nature and Landscape Conservation, Original Research, Chiffchaff, genetic differentiation, hybrid zone, hybridization, introgression, speciation
63 references, page 1 of 5

Abbott, R. J., Barton, N. H., & Good, J. M. (2016). Genomics of hybridization and its evolutionary consequences. Molecular Ecology, 25, 2325–2332.27145128 [PubMed]

Alcaide, M., Scordato, E. S., Price, T. D., & Irwin, D. E. (2014). Genomic divergence in a ring species complex. Nature, 511, 83–85.24870239 [PubMed]

Barton, N. H., & Hewitt, G. M. (1989). Adaptation, speciation and hybrid zones. Nature, 341, 497–503.2677747 [PubMed]

Bensch, S., Åkesson, S., & Irwin, D. E. (2002). The use of AFLP to find an informative SNP: Genetic differences across a migratory divide in willow warblers. Molecular Ecology, 11, 2359–2366.12406246 [OpenAIRE] [PubMed]

Bensch, S., Grahn, M., Müller, N., Gay, L., & Åkesson, S. (2009). Genetic, morphological, and feather isotope variation of migratory willow warblers show gradual divergence in a ring. Molecular Ecology, 18, 3087–3096.19457197 [PubMed]

Bensch, S., Helbig, A. J., Salomon, M., & Seibold, I. (2002). Amplified fragment length polymorphism analysis identifies hybrids between two subspecies of warblers. Molecular Ecology, 11, 473–481.11918782 [PubMed]

Bensch, S., Irwin, D. E., Irwin, J. H., Kvist, L., & Åkesson, S. (2006). Conflicting patterns of mitochondrial and nuclear DNA diversity in Phylloscopus warblers. Molecular Ecology, 15, 161–171.16367838 [PubMed]

Bierne, N., Gagnaire, P.‐A., & David, P. (2013). The geography of introgression in a patchy environment and the thorn in the side of ecological speciation. Current Zoology, 59, 72–86. [OpenAIRE]

Coyne, J. A., & Orr, H. A. (2004). Speciation. Sunderland, MA: Sinauer Associates.

De Knijff, P., van der Spek, V., & Fischer, J. (2012). Genetic identity of grey chiffchaffs trapped in the Netherlands in autumns of 2009–11. Dutch Birding, 34, 386–392.

De Pristo, M. A., Banks, E., Poplin, R., Garimella, K. V., Maguire, J. R., Hartl, C., … Daly, M. J. (2011). A framework for variation discovery and genotyping using next‐generation DNA sequencing data. Nature Genetics, 43, 491–498.21478889 [OpenAIRE] [PubMed]

Dean, A. R., & Svensson, L. (2005). Siberian chiffchaff revisited. British Birds, 98, 396–410.

Delmore, K. E., Hubner, S., Kane, N. C., Schuster, R., Andrew, R. L., Camara, F., ··· Irwin, D. E. (2015). Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation. Molecular Ecology, 24, 1873–1888.25808860 [PubMed]

Ellegren, H., Smeds, L., Burri, R., Olason, P., Backström, N., Kawakami, T., ··· Wolf, J. B. W. (2012). The genomics of species differentiation in Ficedula flycatchers. Nature, 491, 756–760.23103876 [PubMed]

Evanno, G., Regnaut, S. and Goudet, J. 2005 Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14: 2611–2620.15969739 [OpenAIRE] [PubMed]

63 references, page 1 of 5
Abstract
Abstract Characterizing patterns of evolution of genetic and phenotypic divergence between incipient species is essential to understand how evolution of reproductive isolation proceeds. Hybrid zones are excellent for studying such processes, as they provide opportunities to assess trait variation in individuals with mixed genetic background and to quantify gene flow across different genomic regions. Here, we combine plumage, song, mtDNA and whole‐genome sequence data and analyze variation across a sympatric zone between the European and the Siberian chiffchaff (Phylloscopus collybita abietinus/tristis) to study how gene exchange between the lineages affects trai...
Subjects
free text keywords: Ekologi, Evolutionary Biology, Evolutionsbiologi, Ecology, Ecology, Evolution, Behavior and Systematics, Nature and Landscape Conservation, Original Research, Chiffchaff, genetic differentiation, hybrid zone, hybridization, introgression, speciation
63 references, page 1 of 5

Abbott, R. J., Barton, N. H., & Good, J. M. (2016). Genomics of hybridization and its evolutionary consequences. Molecular Ecology, 25, 2325–2332.27145128 [PubMed]

Alcaide, M., Scordato, E. S., Price, T. D., & Irwin, D. E. (2014). Genomic divergence in a ring species complex. Nature, 511, 83–85.24870239 [PubMed]

Barton, N. H., & Hewitt, G. M. (1989). Adaptation, speciation and hybrid zones. Nature, 341, 497–503.2677747 [PubMed]

Bensch, S., Åkesson, S., & Irwin, D. E. (2002). The use of AFLP to find an informative SNP: Genetic differences across a migratory divide in willow warblers. Molecular Ecology, 11, 2359–2366.12406246 [OpenAIRE] [PubMed]

Bensch, S., Grahn, M., Müller, N., Gay, L., & Åkesson, S. (2009). Genetic, morphological, and feather isotope variation of migratory willow warblers show gradual divergence in a ring. Molecular Ecology, 18, 3087–3096.19457197 [PubMed]

Bensch, S., Helbig, A. J., Salomon, M., & Seibold, I. (2002). Amplified fragment length polymorphism analysis identifies hybrids between two subspecies of warblers. Molecular Ecology, 11, 473–481.11918782 [PubMed]

Bensch, S., Irwin, D. E., Irwin, J. H., Kvist, L., & Åkesson, S. (2006). Conflicting patterns of mitochondrial and nuclear DNA diversity in Phylloscopus warblers. Molecular Ecology, 15, 161–171.16367838 [PubMed]

Bierne, N., Gagnaire, P.‐A., & David, P. (2013). The geography of introgression in a patchy environment and the thorn in the side of ecological speciation. Current Zoology, 59, 72–86. [OpenAIRE]

Coyne, J. A., & Orr, H. A. (2004). Speciation. Sunderland, MA: Sinauer Associates.

De Knijff, P., van der Spek, V., & Fischer, J. (2012). Genetic identity of grey chiffchaffs trapped in the Netherlands in autumns of 2009–11. Dutch Birding, 34, 386–392.

De Pristo, M. A., Banks, E., Poplin, R., Garimella, K. V., Maguire, J. R., Hartl, C., … Daly, M. J. (2011). A framework for variation discovery and genotyping using next‐generation DNA sequencing data. Nature Genetics, 43, 491–498.21478889 [OpenAIRE] [PubMed]

Dean, A. R., & Svensson, L. (2005). Siberian chiffchaff revisited. British Birds, 98, 396–410.

Delmore, K. E., Hubner, S., Kane, N. C., Schuster, R., Andrew, R. L., Camara, F., ··· Irwin, D. E. (2015). Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation. Molecular Ecology, 24, 1873–1888.25808860 [PubMed]

Ellegren, H., Smeds, L., Burri, R., Olason, P., Backström, N., Kawakami, T., ··· Wolf, J. B. W. (2012). The genomics of species differentiation in Ficedula flycatchers. Nature, 491, 756–760.23103876 [PubMed]

Evanno, G., Regnaut, S. and Goudet, J. 2005 Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14: 2611–2620.15969739 [OpenAIRE] [PubMed]

63 references, page 1 of 5
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