publication . Article . 2015

CustusX: an open-source research platform for image-guided therapy

Ingerid Reinertsen; Thomas Langø; Cecilie Våpenstad; Håkon Olav Leira;
Open Access
  • Published: 01 Sep 2015 Journal: International Journal of Computer Assisted Radiology and Surgery, volume 11, pages 505-519 (issn: 1861-6410, eissn: 1861-6429, Copyright policy)
  • Publisher: Springer Nature
Abstract
Purpose CustusX is an image-guided therapy (IGT) research platform dedicated to intraoperative navigation and ultrasound imaging. In this paper, we present CustusX as a robust, accurate, and extensible platform with full access to data and algorithms and show examples of application in technological and clinical IGT research. Methods CustusX has been developed continuously for more than 15 years based on requirements from clinical and technological researchers within the framework of a well-defined software quality process. The platform was designed as a layered architecture with plugins based on the CTK/OSGi framework, a superbuild that manages dependencies and...
Subjects
free text keywords: Surgery, Health Informatics, Radiology Nuclear Medicine and imaging, General Medicine, Original Article, Image-guided therapy, Intraoperative ultrasound, Open source, Platform, Computer-assisted interventions
Funded by
EC| RASIMAS
Project
RASIMAS
Regional Anaesthesia Simulator and Assistant
  • Funder: European Commission (EC)
  • Project Code: 610425
  • Funding stream: FP7 | SP1 | ICT
42 references, page 1 of 3

Fedorov, A, Beichel, R, Kalpathy-Cramer, J, Finet, J, Fillion-Robin, JC, Pujol, S, Bauer, C, Jennings, D, Fennessy, F, Sonka, M, Buatti, J, Aylward, S, Miller, JV, Pieper, S, Kikinis, R. 3D slicer as an image computing platform for the quantitative imaging network. Magn Reson Imaging. 2012; 30 (9): 1323-1341 [OpenAIRE] [PubMed] [DOI]

Lasso, A, Heffter, T, Rankin, A, Pinter, C, Ungi, T, Fichtinger, G. PLUS: open-source toolkit for ultrasound-guided intervention systems. IEEE Trans Biomed Eng. 2014; 61 (10): 2527-2537 [OpenAIRE] [PubMed] [DOI]

Nolden, M, Zelzer, S, Seitel, A, Wald, D, Muller, M, Franz, AM, Maleike, D, Fangerau, M, Baumhauer, M, Maier-Hein, L, Maier-Hein, KH, Meinzer, HP, Wolf, I. The medical imaging interaction toolkit: challenges and advances: 10 years of open-source development. Int J Comput Assist Radiol Surg. 2013; 8 (4): 607-620 [OpenAIRE] [PubMed] [DOI]

Mercier, L, Del Maestro, RF, Petrecca, K, Kochanowska, A, Drouin, S, Yan, CX, Janke, AL, Chen, SJ, Collins, DL. New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: system description and validation. Int J Comput Assist Radiol Surg. 2011; 6 (4): 507-522 [OpenAIRE] [PubMed] [DOI]

Ince, DC, Hatton, L, Graham-Cumming, J. The case for open computer programs. Nature. 2012; 482 (7386): 485-488 [OpenAIRE] [PubMed] [DOI]

Bradski, G, Kaehler, A. Learning OpenCV: computer vision with the OpenCV library. 2008

7.Tokuda J, Fischer GS, Papademetris X, Yaniv Z, Ibanez L, Cheng P, Liu H, Blevins J, Arata J, Golby AJ, Kapur T, Pieper S, Burdette EC, Fichtinger G, Tempany CM, Hata N (2009) OpenIGTLink: an open network protocol for image-guided therapy environment. Int J Med Robot Comput Assist Surg 5(4):423–434. ISSN: 1478-596X. doi:10.1002/rcs.274

Cleary, K, Cheng, P, Enquobahrie, A, Yaniv, Z. IGSTK: the book. 2007

9.OSGI Alliance (2009) OSGi service platform, core specification, release 4, Version 4.2. OSGI Alliance. http://www.osgi.org/Download/Release4V42

Rosset, A, Spadola, L, Ratib, O. OsiriX: an open-source software for navigating in multidimensional dicom images. J Digit Imaging. 2004; 17 (3): 205-216 [OpenAIRE] [PubMed] [DOI]

Yushkevich, PA, Piven, J, Hazlett, HC, Smith, RG, Ho, S, Gee, JC, Gerig, G. User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability. Neuroimage. 2006; 31 (3): 1116-1128 [OpenAIRE] [PubMed] [DOI]

12.Homann H (2007) Implementation of a 3D thinning algorithm. Insight J. http://hdl.handle.net/1926/1292

Smistad, E, Elster, AC, Lindseth, F. GPU accelerated segmentation and centerline extraction of tubular structures from medical images. Int J Comput Assist Radiol Surg. 2014; 9 (4): 561-575 [OpenAIRE] [PubMed] [DOI]

Ibanez, L, Schroeder, W, Ng, L, Cates, J. The ITK software guide. 2005

Reinertsen, I, Lindseth, F, Askeland, C, Iversen, DH, Unsgard, G. Intra-operative correction of brain-shift. Acta Neurochir (Wien). 2014; 156 (7): 1301-1310 [OpenAIRE] [PubMed] [DOI]

42 references, page 1 of 3
Abstract
Purpose CustusX is an image-guided therapy (IGT) research platform dedicated to intraoperative navigation and ultrasound imaging. In this paper, we present CustusX as a robust, accurate, and extensible platform with full access to data and algorithms and show examples of application in technological and clinical IGT research. Methods CustusX has been developed continuously for more than 15 years based on requirements from clinical and technological researchers within the framework of a well-defined software quality process. The platform was designed as a layered architecture with plugins based on the CTK/OSGi framework, a superbuild that manages dependencies and...
Subjects
free text keywords: Surgery, Health Informatics, Radiology Nuclear Medicine and imaging, General Medicine, Original Article, Image-guided therapy, Intraoperative ultrasound, Open source, Platform, Computer-assisted interventions
Funded by
EC| RASIMAS
Project
RASIMAS
Regional Anaesthesia Simulator and Assistant
  • Funder: European Commission (EC)
  • Project Code: 610425
  • Funding stream: FP7 | SP1 | ICT
42 references, page 1 of 3

Fedorov, A, Beichel, R, Kalpathy-Cramer, J, Finet, J, Fillion-Robin, JC, Pujol, S, Bauer, C, Jennings, D, Fennessy, F, Sonka, M, Buatti, J, Aylward, S, Miller, JV, Pieper, S, Kikinis, R. 3D slicer as an image computing platform for the quantitative imaging network. Magn Reson Imaging. 2012; 30 (9): 1323-1341 [OpenAIRE] [PubMed] [DOI]

Lasso, A, Heffter, T, Rankin, A, Pinter, C, Ungi, T, Fichtinger, G. PLUS: open-source toolkit for ultrasound-guided intervention systems. IEEE Trans Biomed Eng. 2014; 61 (10): 2527-2537 [OpenAIRE] [PubMed] [DOI]

Nolden, M, Zelzer, S, Seitel, A, Wald, D, Muller, M, Franz, AM, Maleike, D, Fangerau, M, Baumhauer, M, Maier-Hein, L, Maier-Hein, KH, Meinzer, HP, Wolf, I. The medical imaging interaction toolkit: challenges and advances: 10 years of open-source development. Int J Comput Assist Radiol Surg. 2013; 8 (4): 607-620 [OpenAIRE] [PubMed] [DOI]

Mercier, L, Del Maestro, RF, Petrecca, K, Kochanowska, A, Drouin, S, Yan, CX, Janke, AL, Chen, SJ, Collins, DL. New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: system description and validation. Int J Comput Assist Radiol Surg. 2011; 6 (4): 507-522 [OpenAIRE] [PubMed] [DOI]

Ince, DC, Hatton, L, Graham-Cumming, J. The case for open computer programs. Nature. 2012; 482 (7386): 485-488 [OpenAIRE] [PubMed] [DOI]

Bradski, G, Kaehler, A. Learning OpenCV: computer vision with the OpenCV library. 2008

7.Tokuda J, Fischer GS, Papademetris X, Yaniv Z, Ibanez L, Cheng P, Liu H, Blevins J, Arata J, Golby AJ, Kapur T, Pieper S, Burdette EC, Fichtinger G, Tempany CM, Hata N (2009) OpenIGTLink: an open network protocol for image-guided therapy environment. Int J Med Robot Comput Assist Surg 5(4):423–434. ISSN: 1478-596X. doi:10.1002/rcs.274

Cleary, K, Cheng, P, Enquobahrie, A, Yaniv, Z. IGSTK: the book. 2007

9.OSGI Alliance (2009) OSGi service platform, core specification, release 4, Version 4.2. OSGI Alliance. http://www.osgi.org/Download/Release4V42

Rosset, A, Spadola, L, Ratib, O. OsiriX: an open-source software for navigating in multidimensional dicom images. J Digit Imaging. 2004; 17 (3): 205-216 [OpenAIRE] [PubMed] [DOI]

Yushkevich, PA, Piven, J, Hazlett, HC, Smith, RG, Ho, S, Gee, JC, Gerig, G. User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability. Neuroimage. 2006; 31 (3): 1116-1128 [OpenAIRE] [PubMed] [DOI]

12.Homann H (2007) Implementation of a 3D thinning algorithm. Insight J. http://hdl.handle.net/1926/1292

Smistad, E, Elster, AC, Lindseth, F. GPU accelerated segmentation and centerline extraction of tubular structures from medical images. Int J Comput Assist Radiol Surg. 2014; 9 (4): 561-575 [OpenAIRE] [PubMed] [DOI]

Ibanez, L, Schroeder, W, Ng, L, Cates, J. The ITK software guide. 2005

Reinertsen, I, Lindseth, F, Askeland, C, Iversen, DH, Unsgard, G. Intra-operative correction of brain-shift. Acta Neurochir (Wien). 2014; 156 (7): 1301-1310 [OpenAIRE] [PubMed] [DOI]

42 references, page 1 of 3
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