Temporal and spatial variation in bacterial communities of “Jonagold” apple (Malus x domestica Borkh.) and “Conference” pear (Pyrus communis L.) floral nectar
- Published: 22 Aug 2019 Journal: MicrobiologyOpen (issn: 2045-8827,
Copyright policy)
- Publisher: Wiley
- Country: Belgium
- Université Catholique de Louvain Belgium
- KU Leuven Belgium
Acinas, S. G., Sarma‐Rupavtarm, R., Klepac‐Ceraj, V., & Polz, M. F. (2005). PCR‐induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Applied and Environmental Microbiology, 71, 8966–8969. 10.1128/AEM.71.12.8966-8969.2005 16332901 [OpenAIRE] [PubMed] [DOI]
Aizenberg‐Gershtein, Y., Izhaki, I., & Halpern, M. (2013). Do honeybees shape the bacterial community composition in floral nectar? PLoS One, 8, e67556 10.1371/journal.pone.0067556 23844027 [OpenAIRE] [PubMed] [DOI]
Aizenberg‐Gershtein, Y., Izhaki, I., Santhanam, R., Kumar, P., Baldwin, I. T., & Halpern, M. (2015). Pyridine‐type alkaloid composition affects bacterial community composition of floral nectar. Scientific Reports, 5, 1–11. 10.1038/srep11536 [OpenAIRE] [DOI]
Álvarez‐Pérez, S., Herrera, C. M., & de Vega, C. (2012). Zooming‐in on floral nectar: A first exploration of nectar‐associated bacteria in wild plant communities. FEMS Microbiology Ecology, 80, 591–602. 10.1111/j.1574-6941.2012.01329.x 22324904 [OpenAIRE] [PubMed] [DOI]
Álvarez‐Pérez, S., Lievens, B., & Fukami, T. (2019). Yeast‐bacterium interactions: The next frontier in nectar research. Trends in Plant Science, 24, 393–401. 10.1016/j.tpl ants.2019.01.012 30792076 [OpenAIRE] [PubMed] [DOI]
Bonn, W. G., & van der Zwet, T. (2000). Distribution and economic importance of fire blight In Vanneste J. L. (Ed.), Fire blight: The disease and its causative agent, Erwinia amylovora, (pp. 37–53). New York, NY: CABI Publishing.
Callahan, B. J., McMurdie, P. J., & Holmes, S. P. (2017). Exact sequence variants should replace operational taxonomic units in marker‐gene data analysis. The ISME Journal, 11, 2639–2643. 10.1038/ismej.2017.119 28731476 [OpenAIRE] [PubMed] [DOI]
Canto, A., & Herrera, C. M. (2012). Micro‐organisms behind the pollination scenes: Microbial imprint on floral nectar sugar variation in a tropical plant community. Annals of Botany, 110, 1173–1183. 10.1093/aob/mcs183 22915578 [OpenAIRE] [PubMed] [DOI]
Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg‐Lyons, D., Lozupone, C. A., Turnbaugh, P. J., … Knight, R. (2011). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences, 108, 4516–4522. 10.1073/pnas.1000080107 [OpenAIRE] [DOI]
Edgar, R. C. (2013). UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996–998. 10.1038/nmeth.2604 23955772 [OpenAIRE] [PubMed] [DOI]
Edgar, R. C. (2016). UNOISE2: Improved error‐correction for Illumina 16S and ITS amplicon sequencing. BioRxiv, 081257, 10.1101/081257 [OpenAIRE] [DOI]
Engel, P., & Moran, N. A. (2013). The gut microbiota of insects ‐ diversity in structure and function. FEMS Microbiology Reviews, 37, 699–735. 10.1111/1574-6976.12025 23692388 [OpenAIRE] [PubMed] [DOI]
Fridman, S., Izhaki, I., Gerchman, Y., & Halpern, M. (2012). Bacterial communities in floral nectar. Environmental Microbiology Reports, 4, 97–104. 10.1111/j.1758-2229.2011.00309.x 23757235 [OpenAIRE] [PubMed] [DOI]
Fuhrman, J. A. (2009). Microbial community structure and its functional implications. Nature, 459, 193–199. 10.1038/nature08058 19444205 [OpenAIRE] [PubMed] [DOI]
Garratt, M. P. D., Breeze, T. D., Jenner, N., Polce, C., Biesmeijer, J. C., & Potts, S. G. (2014). Avoiding a bad apple: Insect pollination enhances fruit quality and economic value. Agriculture, Ecosystems and Environment, 184, 34–40. 10.1016/j.agee.2013.10.032 [OpenAIRE] [DOI]
- Université Catholique de Louvain Belgium
- KU Leuven Belgium
Acinas, S. G., Sarma‐Rupavtarm, R., Klepac‐Ceraj, V., & Polz, M. F. (2005). PCR‐induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Applied and Environmental Microbiology, 71, 8966–8969. 10.1128/AEM.71.12.8966-8969.2005 16332901 [OpenAIRE] [PubMed] [DOI]
Aizenberg‐Gershtein, Y., Izhaki, I., & Halpern, M. (2013). Do honeybees shape the bacterial community composition in floral nectar? PLoS One, 8, e67556 10.1371/journal.pone.0067556 23844027 [OpenAIRE] [PubMed] [DOI]
Aizenberg‐Gershtein, Y., Izhaki, I., Santhanam, R., Kumar, P., Baldwin, I. T., & Halpern, M. (2015). Pyridine‐type alkaloid composition affects bacterial community composition of floral nectar. Scientific Reports, 5, 1–11. 10.1038/srep11536 [OpenAIRE] [DOI]
Álvarez‐Pérez, S., Herrera, C. M., & de Vega, C. (2012). Zooming‐in on floral nectar: A first exploration of nectar‐associated bacteria in wild plant communities. FEMS Microbiology Ecology, 80, 591–602. 10.1111/j.1574-6941.2012.01329.x 22324904 [OpenAIRE] [PubMed] [DOI]
Álvarez‐Pérez, S., Lievens, B., & Fukami, T. (2019). Yeast‐bacterium interactions: The next frontier in nectar research. Trends in Plant Science, 24, 393–401. 10.1016/j.tpl ants.2019.01.012 30792076 [OpenAIRE] [PubMed] [DOI]
Bonn, W. G., & van der Zwet, T. (2000). Distribution and economic importance of fire blight In Vanneste J. L. (Ed.), Fire blight: The disease and its causative agent, Erwinia amylovora, (pp. 37–53). New York, NY: CABI Publishing.
Callahan, B. J., McMurdie, P. J., & Holmes, S. P. (2017). Exact sequence variants should replace operational taxonomic units in marker‐gene data analysis. The ISME Journal, 11, 2639–2643. 10.1038/ismej.2017.119 28731476 [OpenAIRE] [PubMed] [DOI]
Canto, A., & Herrera, C. M. (2012). Micro‐organisms behind the pollination scenes: Microbial imprint on floral nectar sugar variation in a tropical plant community. Annals of Botany, 110, 1173–1183. 10.1093/aob/mcs183 22915578 [OpenAIRE] [PubMed] [DOI]
Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg‐Lyons, D., Lozupone, C. A., Turnbaugh, P. J., … Knight, R. (2011). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences, 108, 4516–4522. 10.1073/pnas.1000080107 [OpenAIRE] [DOI]
Edgar, R. C. (2013). UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996–998. 10.1038/nmeth.2604 23955772 [OpenAIRE] [PubMed] [DOI]
Edgar, R. C. (2016). UNOISE2: Improved error‐correction for Illumina 16S and ITS amplicon sequencing. BioRxiv, 081257, 10.1101/081257 [OpenAIRE] [DOI]
Engel, P., & Moran, N. A. (2013). The gut microbiota of insects ‐ diversity in structure and function. FEMS Microbiology Reviews, 37, 699–735. 10.1111/1574-6976.12025 23692388 [OpenAIRE] [PubMed] [DOI]
Fridman, S., Izhaki, I., Gerchman, Y., & Halpern, M. (2012). Bacterial communities in floral nectar. Environmental Microbiology Reports, 4, 97–104. 10.1111/j.1758-2229.2011.00309.x 23757235 [OpenAIRE] [PubMed] [DOI]
Fuhrman, J. A. (2009). Microbial community structure and its functional implications. Nature, 459, 193–199. 10.1038/nature08058 19444205 [OpenAIRE] [PubMed] [DOI]
Garratt, M. P. D., Breeze, T. D., Jenner, N., Polce, C., Biesmeijer, J. C., & Potts, S. G. (2014). Avoiding a bad apple: Insect pollination enhances fruit quality and economic value. Agriculture, Ecosystems and Environment, 184, 34–40. 10.1016/j.agee.2013.10.032 [OpenAIRE] [DOI]