publication . Preprint . Other literature type . 2018

Co-circulating mumps lineages at multiple geographic scales

Wohl, Shirlee; Metsky, Hayden C; Schaffner, Stephen F; Piantadosi, Anne; Burns, Meagan; Lewnard, Joseph A; Chak, Bridget; Krasilnikova, Lydia A; Siddle, Katherine J; Matranga, Christian B; ...
Open Access English
  • Published: 12 Jun 2018
  • Publisher: Cold Spring Harbor Laboratory
Abstract
<jats:title>Abstract</jats:title><jats:p>Despite widespread vaccination, eleven thousand mumps cases were reported in the United States (US) in 2016–17, including hundreds in Massachusetts, primarily in college settings. We generated 203 whole genome mumps virus (MuV) sequences from Massachusetts and 15 other states to understand the dynamics of mumps spread locally and nationally, as well as to search for variants potentially related to vaccination. We observed multiple MuV lineages circulating within Massachusetts during 2016–17, evidence for multiple introductions of the virus to the state, and extensive geographic movement of MuV within the US on short time ...
Funded by
NIH| MEDICAL SCIENTISTS
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 5T32GM007753-07
  • Funding stream: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
,
NIH| Genomic Center for Infectious Disease
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 5U19AI110818-02
  • Funding stream: NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES
,
NIH| MIDAS Center for Communicable Disease Dynamics
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 1U54GM088558-01
  • Funding stream: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
39 references, page 1 of 3

Centers for Disease Control and Prevention. Mumps Cases and Outbreaks. (2018). Available at: https://www.cdc.gov/mumps/outbreaks.html. (Accessed: 9th March 2018)

Centers for Disease Control and Prevention. FastStats - Immunization. J. Infect. Dis. 198, 508-515 (2017).

Centers for Disease Control and Prevention. Measles Prevention: Recommendations of the Immunization Practices Advisory Committee (ACIP). MMWR Surveill. Summ. 38, 1-18 (1989).

Dayan, G. H. et al. Recent resurgence of mumps in the United States. N. Engl. J. Med. 358, 1580-1589 (2008).

Med. (2018).

11. Davidkin, I., Jokinen, S., Paananen, A., Leinikki, P. & Peltola, H. Etiology of mumps-like illnesses in children and adolescents vaccinated for measles, mumps, and rubella. J. Infect. Dis. 191, 719-723 (2005). [OpenAIRE]

12. Centers for Disease Control and Prevention. Influenza & Parotitis: Question & Answers for Health Care Providers. Cell 161, 1516-1526 (2016).

15. Kimberlin, D. W., Brady, M. T., Jackson, M. A. & Long, S. S. Red Book, (2015): 2015 Report of the Committee on Infectious Diseases. (Am Acad Pediatrics, 2015).

19. Didelot, X., Gardy, J. & Colijn, C. Bayesian inference of infectious disease transmission from wholegenome sequence data. Mol. Biol. Evol. 31, 1869-1879 (2014). [OpenAIRE]

20. Yeo, R. P., Afzal, M. A., Forsey, T. & Rima, B. K. Identification of a new mumps virus lineage by nucleotide sequence analysis of the SH gene of ten different strains. Arch. Virol. 128, 371-377 (1993). [OpenAIRE]

21. Jin, L. et al. Proposal for genetic characterisation of wild-type mumps strains: preliminary standardisation of the nomenclature. Arch. Virol. 150, 1903-1909 (2005).

23. Cui, A. et al. Evolutionary analysis of mumps viruses of genotype F collected in mainland China in 2001- 2015. Sci. Rep. 7, 17144 (2017).

24. Marin, M., Marlow, M., Moore, K. L. & Patel, M. Recommendation of the Advisory Committee on Immunization Practices for Use of a Third Dose of Mumps Virus--Containing Vaccine in Persons at Increased Risk for Mumps During an Outbreak. MMWR Morb. Mortal. Wkly. Rep. 67, 33-38 (2018). [OpenAIRE]

25. Centers for Disease Control and Prevention. Mumps 2012 Case Definition. National Notifiable Diseases Surveillance System (NNDSS) (2012). Available at: https://wwwn.cdc.gov/nndss/conditions/mumps/casedefinition/2012/.

29. Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).

39 references, page 1 of 3
Abstract
<jats:title>Abstract</jats:title><jats:p>Despite widespread vaccination, eleven thousand mumps cases were reported in the United States (US) in 2016–17, including hundreds in Massachusetts, primarily in college settings. We generated 203 whole genome mumps virus (MuV) sequences from Massachusetts and 15 other states to understand the dynamics of mumps spread locally and nationally, as well as to search for variants potentially related to vaccination. We observed multiple MuV lineages circulating within Massachusetts during 2016–17, evidence for multiple introductions of the virus to the state, and extensive geographic movement of MuV within the US on short time ...
Funded by
NIH| MEDICAL SCIENTISTS
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 5T32GM007753-07
  • Funding stream: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
,
NIH| Genomic Center for Infectious Disease
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 5U19AI110818-02
  • Funding stream: NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES
,
NIH| MIDAS Center for Communicable Disease Dynamics
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 1U54GM088558-01
  • Funding stream: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
39 references, page 1 of 3

Centers for Disease Control and Prevention. Mumps Cases and Outbreaks. (2018). Available at: https://www.cdc.gov/mumps/outbreaks.html. (Accessed: 9th March 2018)

Centers for Disease Control and Prevention. FastStats - Immunization. J. Infect. Dis. 198, 508-515 (2017).

Centers for Disease Control and Prevention. Measles Prevention: Recommendations of the Immunization Practices Advisory Committee (ACIP). MMWR Surveill. Summ. 38, 1-18 (1989).

Dayan, G. H. et al. Recent resurgence of mumps in the United States. N. Engl. J. Med. 358, 1580-1589 (2008).

Med. (2018).

11. Davidkin, I., Jokinen, S., Paananen, A., Leinikki, P. & Peltola, H. Etiology of mumps-like illnesses in children and adolescents vaccinated for measles, mumps, and rubella. J. Infect. Dis. 191, 719-723 (2005). [OpenAIRE]

12. Centers for Disease Control and Prevention. Influenza & Parotitis: Question & Answers for Health Care Providers. Cell 161, 1516-1526 (2016).

15. Kimberlin, D. W., Brady, M. T., Jackson, M. A. & Long, S. S. Red Book, (2015): 2015 Report of the Committee on Infectious Diseases. (Am Acad Pediatrics, 2015).

19. Didelot, X., Gardy, J. & Colijn, C. Bayesian inference of infectious disease transmission from wholegenome sequence data. Mol. Biol. Evol. 31, 1869-1879 (2014). [OpenAIRE]

20. Yeo, R. P., Afzal, M. A., Forsey, T. & Rima, B. K. Identification of a new mumps virus lineage by nucleotide sequence analysis of the SH gene of ten different strains. Arch. Virol. 128, 371-377 (1993). [OpenAIRE]

21. Jin, L. et al. Proposal for genetic characterisation of wild-type mumps strains: preliminary standardisation of the nomenclature. Arch. Virol. 150, 1903-1909 (2005).

23. Cui, A. et al. Evolutionary analysis of mumps viruses of genotype F collected in mainland China in 2001- 2015. Sci. Rep. 7, 17144 (2017).

24. Marin, M., Marlow, M., Moore, K. L. & Patel, M. Recommendation of the Advisory Committee on Immunization Practices for Use of a Third Dose of Mumps Virus--Containing Vaccine in Persons at Increased Risk for Mumps During an Outbreak. MMWR Morb. Mortal. Wkly. Rep. 67, 33-38 (2018). [OpenAIRE]

25. Centers for Disease Control and Prevention. Mumps 2012 Case Definition. National Notifiable Diseases Surveillance System (NNDSS) (2012). Available at: https://wwwn.cdc.gov/nndss/conditions/mumps/casedefinition/2012/.

29. Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).

39 references, page 1 of 3
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