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[Expression and function prediction of miR-618 in sputa and sera of patients with pulmonary tuberculosis].

Authors: Zhengjun, Yi; Yurong, Fu; Hongjuan, Wu; Shan, Zhao;

[Expression and function prediction of miR-618 in sputa and sera of patients with pulmonary tuberculosis].

Abstract

To measure the level of miR-618 in sputa and sera from the patients with pulmonary tuberculosis, determine the concentration of IL-13 which is a cytokine encoded by target gene of miR-618, and predict the function of miR-618 with bioinformatics.Sputum and serum samples were collected from the healthy controls and the patients with active pulmonary tuberculosis, respectively. Level of miR-618 was measured by nucleic acid hybridization and real-time quantitative RT-PCR(qRT-PCR). Concentration of IL-13 was determined by ELISA. Target genes of miR-618 were predicted with TargetSean, and GO annotation and biological pathway of the target genes were analyzed with DAVID database and BINGO of Cytoscape.Both hybridization and qRT-PCR results showed that level of miR-618 in both sputa and sera obviously decreased in the tuberculosis group compared to the control group (P<0.05). There was no statistical difference in IL-13 concentration between the tuberculosis group and the control group, however, it had an increasing tendency in the former. GO annotation of predicted target genes of miR-618 was enriched in biological processes such as regulation of transcription and molecular functions such as DNA binding (P<0.05). In KEGG pathway, the predicted target genes mostly existed in TGF-β signaling pathway (P<0.05).Level of miR-618 in both sputa and sera was significantly lower in the tuberculosis group than that in the control group and predicted target genes of miR-618 were mainly involved in biological processes such as regulation of transcription and RNA metabolism.

Related Organizations
Keywords

Adult, Male, MicroRNAs, Interleukin-13, Sputum, Computational Biology, Humans, Female, Tuberculosis, Pulmonary

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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