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Online Jaqpot Hackathon - Take your research from the bench to the community by making your models available as a web service

Name: Online Jaqpot Hackathon - Take your research from the bench to the community by making your models available as a web service
Keywords: Nanosafety assessment, e-tools, modelling, data FAIRness, nanoinformatics

descriptionPublicationkeyboard_double_arrow_right Presentation , Other literature type 03 Jun 2020 English Zenodo

Martin Himly (PLUS); Lynch, Iseult; Maier, Dieter; Doganis, Philip;

doi: 10.5281/zenodo.3908229 , 10.5281/zenodo.3908228

Online Jaqpot Hackathon - Take your research from the bench to the community by making your models available as a web service

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Abstract

Under the subtitle “Take your research from the bench to the community by making your models available as a web service”, attendees learned how to use the Jaqpot suite and python to go from data to model, starting from a common CSV file. Jaqpot is a computational platform for in silico modelling of chemical compounds, that provides both access to its services both over a User Interface (GUI) and an Application Programming Interface (API). It is a cloud-ready application that uses the benefits of Java, R and Python, having incorporated functionality by various established and open-source machine learning and data analysis toolkits, while algorithms in any programming algorithm can be added to Jaqpot. Attached you find the following presentations: 1. Intro to NanoCommons by Martin Himly, PLUS 2. Electronic Lab Notebooks by Iseult Lynch, UoB 3. NanoCommons Knowledgebase by Dieter Maier, Biomax 4. Jaqpot Suite by Philip Doganis, NTUA

Keywords

Nanosafety assessment, e-tools, modelling, data FAIRness, nanoinformatics

8 Research products, page 1 of 1

Jaqpot 5: How to simulate biodistribution scenarios using custom PBPK models
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Jaqpot 5: How to access and use an existing predictive model
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Jaqpot 5: How to manage and use organisations
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Jaqpot 5 - User accounts
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Jaqpot 5: How to deploy a predictive model using the jaqpotpy library
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PBPK modelling on the Jaqpot web platform - a PAA-peg nanoparticles case study
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Jaqpot Quattro: A Novel Computational Web Platform for Modeling and Analysis in Nanoinformatics.
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Deliverable Raport D4.3 nQSAR Modelling infrastructure
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Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average

Usage byUsageCounts

visibility	views	303
download	downloads	73

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average

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EC| NanoCommons