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Data Extraction and Synthesis in Systematic Reviews of Diagnostic Test Accuracy: A Corpus for Automating and Evaluating the Process

Authors: Norman, Christopher; Leeflang, Mariska; Névéol, Aurélie;

Data Extraction and Synthesis in Systematic Reviews of Diagnostic Test Accuracy: A Corpus for Automating and Evaluating the Process

Abstract

Background: Systematic reviews are critical for obtaining accurate estimates of diagnostic test accuracy, yet theserequire extracting information buried in free text articles, which is often laborious. Objective: We create a datasetdescribing the data extraction and synthesis processes in 63 DTA systematic reviews, and demonstrate its utility byusing it to replicate the data synthesis in the original reviews. Method: We construct our dataset using a customautomated extraction pipeline complemented with manual extraction, verification, and post-editing. We evaluate us-ing manual assessment by two annotators and by comparing against data extracted from source files. Results: Theconstructed dataset contains 5,848 test results for 1,354 diagnostic tests from 1,738 diagnostic studies. We observe anextraction error rate of 0.06–0.3%. Conclusions: This constitutes the first dataset describing the later stages of theDTA systematic review process, and is intended to be useful for automating or evaluating the process.

International audience

Country
France
Keywords

[INFO.INFO-CL] Computer Science [cs]/Computation and Language [cs.CL], Diagnostic Tests, Routine, Datasets as Topic, Information Storage and Retrieval, [INFO]Computer Science [cs], [INFO] Computer Science [cs], [INFO.INFO-CL]Computer Science [cs]/Computation and Language [cs.CL], Systematic Reviews as Topic

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download
citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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6
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