<script type="text/javascript">
<!--
document.write('<div id="oa_widget"></div>');
document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=undefined&type=result"></script>');
-->
</script>

COPY SCRIPT

For further information contact us at helpdesk@openaire.eu

comparison of oxford nanopore basecalling tools

descriptionPublicationkeyboard_double_arrow_right Preprint , Other literature type 08 Nov 2017 English Publisher:Zenodo

Authors: Ryan Wick; Louise M Judd; Kathryn E Holt;

doi: 10.5281/zenodo.1043611 , 10.5281/zenodo.1163725 , 10.5281/zenodo.1082696 , 10.5281/zenodo.1188469 , 10.5281/zenodo.1043612 , 10.5281/zenodo.1134473

comparison of oxford nanopore basecalling tools

- Summary
- Related research
  (2)
- Metrics

Abstract

This repository uses a bacterial genome to assess the read accuracy and consensus sequence accuracy for Oxford Nanopore Technologies (ONT) basecallers. Albacore v2.1.2 and Scrappie raw v1.1.1 (both developed by ONT) were the best overall performers, and Chiron v0.2 was the best performing third-party basecaller. Consensus sequence accuracies reached approximately 99.5%, revealing that even the best basecallers still have systematic errors. Nanopolish, used with its methylation-aware option, was able to raise consensus accuracy to about 99.9%.

Related Organizations

University of Melbourne
Australia

Filter by relation

All relations

arrow_drop_down

2 Research products, page 1 of 1

rrwick/Basecalling-comparison: Chiron v0.3 and Guppy v0.3.0
integration_instructionsResearch software2017HasVersion
linkLink to
shareshareShare
citeCite
addClaim
Please grant OpenAIRE to access and update your ORCID works.
This Research product is the result of merged Research products in OpenAIRE.

You have already added works in your ORCID record related to the merged Research product.
This Research product is the result of merged Research products in OpenAIRE.

You have already added works in your ORCID record related to the merged Research product.
Select content type to embed
All Research products
arrow_drop_down
<script type="text/javascript">  </script>
COPY SCRIPT
For further information contact us at helpdesk@openaire.eu
more_vert
linkLink to
shareshareShare
citeCite
addClaim
Please grant OpenAIRE to access and update your ORCID works.
This Research product is the result of merged Research products in OpenAIRE.

You have already added works in your ORCID record related to the merged Research product.
This Research product is the result of merged Research products in OpenAIRE.

You have already added works in your ORCID record related to the merged Research product.
Select content type to embed
All Research products
arrow_drop_down
<script type="text/javascript">  </script>
COPY SCRIPT
For further information contact us at helpdesk@openaire.eu
rrwick/Basecalling-comparison: Chiron v0.3 and Guppy v0.3.0
integration_instructionsResearch software2017IsAmongTopNSimilarDocuments
linkLink to
shareshareShare
citeCite
addClaim
Please grant OpenAIRE to access and update your ORCID works.
This Research product is the result of merged Research products in OpenAIRE.

You have already added works in your ORCID record related to the merged Research product.
This Research product is the result of merged Research products in OpenAIRE.

You have already added works in your ORCID record related to the merged Research product.
Select content type to embed
All Research products
arrow_drop_down
<script type="text/javascript">  </script>
COPY SCRIPT
For further information contact us at helpdesk@openaire.eu
more_vert
linkLink to
shareshareShare
citeCite
addClaim
Please grant OpenAIRE to access and update your ORCID works.
This Research product is the result of merged Research products in OpenAIRE.

You have already added works in your ORCID record related to the merged Research product.
This Research product is the result of merged Research products in OpenAIRE.

You have already added works in your ORCID record related to the merged Research product.
Select content type to embed
All Research products
arrow_drop_down
<script type="text/javascript">  </script>
COPY SCRIPT
For further information contact us at helpdesk@openaire.eu

Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	15
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Top 10%
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Top 10%
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Top 10%