publication . Report . 2016

BioMedBridges: Final version of the web-service for segmentation and identification of components in volume data

Winn, Martyn; Patwardhan, Ardan; Agnel Praveen, Joseph; Lagerstedt, Ingvar;
Open Access
  • Published: 11 Feb 2016
Abstract
We have developed a software pipeline, named SMaSB, to perform automated volume/shape matching. Together with a database of over 1000 volumes from the Electron Microscopy Data Bank (EMDB) and Protein Data Bank (PDB), the pipeline underpins a web service PDBeShape. These tools are novel in providing access to a growing class of structural biology data viz. volume data. The development of SMaSB was reported in Deliverable 9.1, and the development of PDBeShape in Deliverable 9.2. Deliverable 9.3 implements automated and manual segmentation into the PDBeShape web service. Automated segmentation with Chimera-Segger is now an integral part of volume pre-processing, wi...
Persistent Identifiers
Subjects
free text keywords: shape-matching, protein, web service, structural biology, volume data, structural data, shape-matching, protein, web service, structural biology, volume data, structural data
Communities
  • EGI Federation
  • Instruct-ERIC
Funded by
EC| BIOMEDBRIDGES
Project
BIOMEDBRIDGES
Building data bridges between biological and medical infrastructures in Europe
  • Funder: European Commission (EC)
  • Project Code: 284209
  • Funding stream: FP7 | SP4 | INFRA
Download from
Open Access
ZENODO
Report . 2016
Provider: ZENODO
Any information missing or wrong?Report an Issue