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A Linear-Time n 0.4 -Approximation for Longest Common Subsequence

Authors: Karl Bringmann; Vincent Cohen-Addad; Debarati Das;

A Linear-Time n 0.4 -Approximation for Longest Common Subsequence

Abstract

We consider the classic problem of computing the Longest Common Subsequence (LCS) of two strings of length n . The 40-year-old quadratic-time dynamic programming algorithm has recently been shown to be near-optimal by Abboud, Backurs, and Vassilevska Williams [FOCS’15] and Bringmann and Künnemann [FOCS’15] assuming the Strong Exponential Time Hypothesis. This has led the community to look for subquadratic approximation algorithms for the problem. Yet, unlike the edit distance problem for which a constant-factor approximation in almost-linear time is known, very little progress has been made on LCS, making it a notoriously difficult problem also in the realm of approximation. For the general setting, only a naive O ( n ɛ /2-approximation algorithm with running time OŠ ( n 2-ɛ has been known, for any constant 0 < ɛ ≤ 1. Recently, a breakthrough result by Hajiaghayi, Seddighin, Seddighin, and Sun [SODA’19] provided a linear-time algorithm that yields a O ( n 0.497956 -approximation in expectation; improving upon the naive \(O(\sqrt {n})\) -approximation for the first time. In this paper, we provide an algorithm that in time O ( n 2-ɛ ) computes an OŠ ( n 2ɛ/5 -approximation with high probability, for any 0 < ɛ ≤ 1. Our result (1) gives an OŠ ( n 0.4 -approximation in linear time, improving upon the bound of Hajiaghayi, Seddighin, Seddighin, and Sun, (2) provides an algorithm whose approximation scales with any subquadratic running time O ( n 2-ɛ ), improving upon the naive bound of O ( n ɛ/2 ) for any ɛ, and (3) instead of only in expectation, succeeds with high probability.

Keywords

FOS: Computer and information sciences, Longest common subsequence, Computer Science - Data Structures and Algorithms, Data Structures and Algorithms (cs.DS), F.2.2, approximation algorithms, string algorithms, 68W32, 68W25

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average
Green