Abstract Background Plants from the Sapindaceae family that are consumed by horses (maple) and humans (ackee and litchi) are known to contain the toxins hypoglycin A and methylenecyclopropylglycine which cause seasonally occurring myopathy in horses and entero‐encephalopathic sickness in humans. Vertical transmission of these toxins from a mare to her foal has been described once. However the mare's milk was not available for analysis in this case. We investigated mare's milk in a similar case. Objective We hypothesized that hypoglycin A and methylenecyclopropylglycine, like other amino acids' are secreted into the milk. Animals Mare with atypical myopathy. Methods A sample of the mare's milk and 6 commercial horse milk samples were extracted with a methanolic standard solution and analyzed for hypoglycin A, methylenecyclopropylglycine, and metabolites using tandem mass spectrometry after column chromatographic separation. Results There were hypoglycin A (0.4 μg/L) and the associated metabolites methylenecyclopropylacetyl glycine and carnitine (18.5 and 24.6 μg/L) plus increased concentrations of several acylcarnitines in the milk. The milk also contained methylenecyclopropylformyl glycine and carnitine (0.8 and 60 μg/L). The latter substances were also detected in 1 of 6 commercial horse milk samples. Conclusions and Clinical Importance Transmission of the maple toxins can occur through mare's milk. Vertical transmission of Sapindacea toxins might also have importance for human medicine, for example, after consumption of ackee or litchi.