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Comparative study on dimension reduction techniques for cluster analysis of microarray data

Authors: Daniel Araujo; Adriao Doria Neto; Allan Martins; Jorge Melo;

Comparative study on dimension reduction techniques for cluster analysis of microarray data

Abstract

This paper proposes a study on the impact of the use of dimension reduction techniques (DRTs) in the quality of partitions produced by cluster analysis of microarray datasets. We tested seven DRTs applied to four microarray cancer datasets and ran four clustering algorithms using the original and reduced datasets. Overall results showed that using DRTs provides a improvement in performance of all algorithms tested, specially in the hierarchical class. We could see that, despite Principal Component Analysis (PCA) being the most widely used DRT, its was overcome by other nonlinear methods and it did not provide a substantial performance increase in the clustering algorithms. On the other hand, t-distributed Stochastic Embedding (t-SNE) and Laplacian Eigenmaps (LE) achieved good results for all datasets.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
8
Average
Average
Average
Related to Research communities
Cancer Research
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