
This paper proposes a study on the impact of the use of dimension reduction techniques (DRTs) in the quality of partitions produced by cluster analysis of microarray datasets. We tested seven DRTs applied to four microarray cancer datasets and ran four clustering algorithms using the original and reduced datasets. Overall results showed that using DRTs provides a improvement in performance of all algorithms tested, specially in the hierarchical class. We could see that, despite Principal Component Analysis (PCA) being the most widely used DRT, its was overcome by other nonlinear methods and it did not provide a substantial performance increase in the clustering algorithms. On the other hand, t-distributed Stochastic Embedding (t-SNE) and Laplacian Eigenmaps (LE) achieved good results for all datasets.
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 8 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Average | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |
