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Nucleic Acids Research
Article . 2025 . Peer-reviewed
License: CC BY NC
Data sources: Crossref
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DragonRNA: Generality of DNA-primed RNA-extension activities by DNA-directed RNA polymerases

Authors: Emily Greenwald; Drew Galls; Joon Park; Nimit Jain; Stephen B Montgomery; Bijoyita Roy; Y Whitney Yin; +1 Authors

DragonRNA: Generality of DNA-primed RNA-extension activities by DNA-directed RNA polymerases

Abstract

Abstract RNA polymerases (RNAPs) transcribe DNA into RNA. Several RNAPs, including from bacteriophages Sp6 and T7, Escherichia coli, and wheat germ, had been shown to add ribonucleotides to DNA 3′ ends. Mitochondria have their own RNAPs (mtRNAPs). Examining reaction products of RNAPs acting on DNA molecules with free 3′ ends, we found yeast and human mtRNAP preparations exhibit a robust activity of extending DNA 3′ ends with ribonucleotides. The resulting molecules are serial DNA→RNA chains with the input DNA on the 5′ end and extended RNA on the 3′ end. Such chains were produced from a wide variety of DNA oligonucleotide inputs with short complementarity in the sequence to the DNA 3′ end with the sequence of the RNA portion complementary to the input DNA. We provide a set of fluorescence-based assays for facile detection of such products and show that this activity is a general property of diverse RNAPs, including phage RNAPs and multi-subunit E. coli RNAP. These results support a model in which DNA serves as both primer and template, with extension beginning when the 3′ end of the DNA is elongated with a ribonucleotide. As this DNA→RNA class of molecule remains unnamed, we propose the name DragonRNA.

Keywords

Transcription, Genetic, Nucleic Acid Enzymes, Escherichia coli, RNA, Humans, DNA-Directed RNA Polymerases, DNA, Templates, Genetic, Ribonucleotides

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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