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Journal of Antimicrobial Chemotherapy
Article . 2011 . Peer-reviewed
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Multilocus sequence typing of IncN plasmids

Authors: García-Fernández A; Villa L; Moodley A; Hasman H; Miriagou V; Guardabassi L; Carattoli A.;

Multilocus sequence typing of IncN plasmids

Abstract

Incompatibility group N (IncN) plasmids have been associated with the dissemination of antimicrobial resistance and are a major vehicle for the spread of bla(VIM-1) in humans and bla(CTX-M-1) in animals. A plasmid multilocus sequence typing (pMLST) scheme was developed for rapid categorization of IncN plasmids.Twelve fully sequenced IncN plasmids available at GenBank were analysed in silico for selecting the loci for the IncN-specific pMLST. A total of 58 plasmids originating from different reservoirs (human, pig, poultry, cattle and horses) and geographic regions (Italy, Greece, Denmark, UK and The Netherlands) were classified by DNA sequencing of the amplicons obtained for the repA, traJ and korA loci.Eleven sequence types (STs) were defined on the basis of allele sequences of the three selected loci. Most plasmids carrying bla(CTX-M-1) (24/27) isolated in different countries from both animals and humans belonged to ST1, suggesting dissemination of an epidemic plasmid through the food chain. Fifteen of 17 plasmids carrying bla(VIM-1) from Klebsiella pneumoniae and Escherichia coli, isolated during a 5 year period in Greece were assigned to ST10, suggesting that spread and persistence of this particular IncN-carrying bla(VIM-1) lineage in Greece.This study proposes the use of pMLST as a suitable and rapid method for identification of IncN epidemic plasmid lineages. The recent spread of bla(CTX-M-1) among humans and animals seems to be associated with the dissemination of an epidemic IncN plasmid lineage.

Countries
Italy, Denmark
Keywords

DNA, Bacterial, Food Chain, Swine, Protein Array Analysis, Microbial Sensitivity Tests, Poultry, PMQR, /dk/atira/pure/core/keywords/Life, Drug Resistance, Bacterial, Escherichia coli, Animals, Humans, Beta-lactamase, Horses, incompatibility group IncN, Disease Reservoirs, Reverse Transcriptase Polymerase Chain Reaction, RNA directed RNA polymerase, antibiotic resistance; article; comparative study; computer model; DNA sequence; Escherichia coli; gene frequency; gene locus; genetic association; geographic distribution; human; incompatibility group N plasmid; Klebsiella pneumoniae; multilocus sequence typing; nonhuman; nucleotide sequence; plasmid; species difference, Animals; Cattle; Disease Reservoirs; DNA, Bacterial; Drug Resistance, Bacterial; Escherichia coli; Europe; Food Chain; Horses; Humans; Klebsiella pneumoniae; Microbial Sensitivity Tests; Multilocus Sequence Typing; Plasmids; Poultry; Protein Array Analysis; Reverse Transcriptase Polymerase Chain Reaction; Swine, Europe, Klebsiella pneumoniae, Cattle, pMLST, Former LIFE faculty, Multilocus Sequence Typing, Plasmids

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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    97
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 1%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
97
Top 1%
Top 1%
Top 10%
bronze