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Bioinformatics
Article . 2006 . Peer-reviewed
Data sources: Crossref
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Bioinformatics
Article
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Bioinformatics
Article . 2006
DBLP
Article . 2022
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OPM: Orientations of Proteins in Membranes database

Authors: Mikhail A. Lomize; Andrei L. Lomize; Irina D. Pogozheva; Henry I. Mosberg;

OPM: Orientations of Proteins in Membranes database

Abstract

Abstract Summary: The Orientations of Proteins in Membranes (OPM) database provides a collection of transmembrane, monotopic and peripheral proteins from the Protein Data Bank whose spatial arrangements in the lipid bilayer have been calculated theoretically and compared with experimental data. The database allows analysis, sorting and searching of membrane proteins based on their structural classification, species, destination membrane, numbers of transmembrane segments and subunits, numbers of secondary structures and the calculated hydrophobic thickness or tilt angle with respect to the bilayer normal. All coordinate files with the calculated membrane boundaries are available for downloading. Availabililty: Contact: almz@umich.edu

Related Organizations
Keywords

Models, Molecular, User-Computer Interface, Models, Chemical, Protein Conformation, Sequence Analysis, Protein, Computer Graphics, Membrane Proteins, Proteins, Computer Simulation, Databases, Protein

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1K
Top 0.1%
Top 1%
Top 1%
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