qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots

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Turner, Stephen;
  • Related identifiers: doi: 10.1101/005165
  • Subject: bepress|Life Sciences|Biology | bepress|Life Sciences|Bioinformatics

Summary: Genome-wide association studies (GWAS) have identified thousands of human trait-associated single nucleotide polymorphisms. Here, I describe a freely available R package for visualizing GWAS results using Q-Q and manhattan plots. The qqman package enables the f... View more
  • References (4)

    Barrett, J. C., Fry, B., Maller, J., & Daly, M. J. (2005). Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics (Oxford, England), 21(2), 263-5. doi:10.1093/bioinformatics/bth457

    Pruim, R. J., Welch, R. P., Sanna, S., Teslovich, T. M., Chines, P. S., Gliedt, T. P., … Willer, C. J. (2010). LocusZoom: regional visualization of genome-wide association scan results. Bioinformatics (Oxford, England), 26(18), 2336-7. doi:10.1093/bioinformatics/btq419

    Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., … Sham, P. C. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics, 81(3), 559-75. doi:10.1086/519795

    Welter, D., MacArthur, J., Morales, J., Burdett, T., Hall, P., Junkins, H., … Parkinson, H. (2014). The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Research, 42(Database issue), D1001-6. doi:10.1093/nar/gkt1229

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    qqman software on GitHub
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