Perception Enhancement using Visual Attributes in Sequence Motif Visualization

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Oon, Yin; Lee, Nung; Kok, Wei;
(2016)
  • Related identifiers: doi: 10.1101/066928
  • Subject: bepress|Life Sciences|Biology | bepress|Life Sciences|Bioinformatics

Sequence logo is a well-accepted scientific method to visualize the conservation characteristics of biological sequence motifs. Previous studies found that using sequence logo graphical representation for scientific evidence reports or arguments could seriously cause bi... View more
  • References (32)
    32 references, page 1 of 4

    Alexandre, D. S., and J.M.R.S., Tavares. 2010. Introduction of human perception in visualization. International Journal of Imaginf and Robotics. 4: 60-70. ISSN:0974-0627.

    Azuaje , F. and J. Dopazo. 2005. Integrative data analysis and visualisation: Introduction to critical problems, goals and challenges. Data Analysis and Visualization in Genomics and Proteomics. Wiley. 1.

    Koffka , K. 2013. Principles of Gestalt psychology, Routledge.

    2008. Theoretical Foundations of Information Visualization. In Kerren, A., Stasko, J.T., Fekete, J.-D., & North, C. (Eds.): Information Visualization - Human-Centered Issues and Perspectives. LNCS State-of-the-Art Survey. Berlin: Springer.

    Schneider, T. D. and M. R. Stephens. 1990. Sequence Logos: a new way to display consensus sequences. Nucleic Acids Research. 18( 20): 6097-6100.

    Bailey, T. L. 2008. Discovering Sequence Motifs. Comparative Genomics. Humana Press. 271-292.

    Lee, N. K. and Y. B. Oon. 2012. Decision Making Biases in using Sequence Logo Visualization. 2012 Southeast Asian Network of Ergonomics Societies Conference (SEANES). IEEE.

    February 2013. Evaluation of methods for modeling transcription factor sequence specificity. Nature Biotechnology. 31(2): 126-134.

    Crooks, G. E., G. Hon, J.-M. Chandonia and S. E. Brenner. 2004.

    Reinherz, G. L. Zhang and V. Brusic. 2013. BlockLogo: Visualization of peptide and sequence motif conservation.

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