Subject: bepress|Life Sciences|Biology | bepress|Life Sciences|Genetics and Genomics|Genomics
Background: Rhesus macaques are widely used in biomedical research, but the application of genomic information in this species to better understand human disease is still undeveloped. Whole-genome sequence (WGS) data in pedigreed macaque colonies could provide substanti... View more
97.2% among individuals) and 96.6% of SNVs for PstI (range 96.1-97.2% among individuals).
Meynert AM, Ansari M, FitzPatrick DR, Taylor MS: Variant detection sensitivity and biases in whole genome and exome sequencing. BMC Bioinformatics 2014, 15:247.
Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR: Low-coverage sequencing: implications for design of complex trait association studies. Genome Res 2011, 21(6):940-951.
Bielenberg DG, Rauh B, Fan S, Gasic K, Abbott AG, Reighard GL, Okie WR, Wells CE: Genotyping by Sequencing for SNP-Based Linkage Map Construction and QTL Analysis of Chilling Requirement and Bloom Date in Peach [Prunus persica (L.) Batsch]. PloS one 2015, 10(10):e0139406.
De Donato M, Peters SO, Mitchell SE, Hussain T, Imumorin IG: Genotyping-bysequencing (GBS): a novel, efficient and cost-effective genotyping method for cattle using next-generation sequencing. PloS one 2013, 8(5):e62137.
Palti Y, Vallejo RL, Gao G, Liu S, Hernandez AG, Rexroad CE, 3rd, Wiens GD: Detection and Validation of QTL Affecting Bacterial Cold Water Disease Resistance in Rainbow Trout Using Restriction-Site Associated DNA Sequencing.
PloS one 2015, 10(9):e0138435.
Pootakham W, Ruang-Areerate P, Jomchai N, Sonthirod C, Sangsrakru D, Yoocha T, Theerawattanasuk K, Nirapathpongporn K, Romruensukharom P, Tragoonrung S et al: Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS). Front Plant Sci 2015, 6:367.
Spindel J, Wright M, Chen C, Cobb J, Gage J, Harrington S, Lorieux M, Ahmadi N, McCouch S: Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Theor Appl Genet 2013, 126(11):2699-2716.
Xu Y, Huang L, Ji D, Chen C, Zheng H, Xie C: Construction of a dense genetic linkage map and mapping quantitative trait loci for economic traits of a doubled haploid population of Pyropia haitanensis (Bangiales, Rhodophyta). BMC Plant Biol 2015, 15:228.