publication . Article . 2017

Organismal and spatial partitioning of energy and macronutrient transformations within a hypersaline mat

Mobberley, Jennifer M.; Lindemann, Stephen R.; Bernstein, Hans C.; Moran, James J.; Renslow, Ryan S.; Babauta, Jerome; Hu, Dehong; Beyenal, Haluk; Nelson, William C.;
Open Access English
  • Published: 01 Mar 2017 Journal: FEMS Microbiology Ecology, volume 93, issue 4 (issn: 0168-6496, eissn: 1574-6941, Copyright policy)
  • Publisher: Oxford University Press
Abstract
Abstract Phototrophic mat communities are model ecosystems for studying energy cycling and elemental transformations because complete biogeochemical cycles occur over millimeter-to-centimeter scales. Characterization of energy and nutrient capture within hypersaline phototrophic mats has focused on specific processes and organisms; however, little is known about community-wide distribution of and linkages between these processes. To investigate energy and macronutrient capture and flow through a structured community, the spatial and organismal distribution of metabolic functions within a compact hypersaline mat community from Hot Lake have been broadly elucidate...
Subjects
free text keywords: element transformations, reconstructed genomes, Research Article, metagenomics, magnesium sulfate, phototrophic, hypersaline
82 references, page 1 of 6

Anantharaman K, Brown CT, Hug LA et al.Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nat Commun 2016;7:13219.27774985 [OpenAIRE] [PubMed]

Anderson G Some limnological features of a shallow saline meromictic lake. Limnol Oceanogr 1958;3:259–70.

Andrews S FastQC: A quality control tool for high throughput sequence data. Available online at http://www.bioinformatics.babraham.ac.uk/projects/fastqc, 2010.

Apprill A, McNally S, Parsons R et al.Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton. Aquatic Microbial Ecology 2015;75:129–37.

Babauta JT, Atci E, Ha PT et al.Localized electron transfer rates and microelectrode-based enrichment of microbial communities within a phototrophic microbial mat. Front Microbiol 2014;5:11. doi:10.3389/fmicb.2014.00011.24478768 [OpenAIRE] [PubMed] [DOI]

Berlemont R, Martiny AC Genomic potential for polysaccharide deconstruction in bacteria. Appl Environ Microb 2015;81:1513–9. [OpenAIRE]

Bernstein HC, Brislawn C, Renslow RS et al.Trade-offs between microbiome diversity and productivity in a stratified microbial mat. ISME J 2016; doi: 10.1038/ismej.2016.133. [OpenAIRE] [DOI]

Bolger AM, Lohse M, Usadel B Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 2014;30:2114–20.24695404 [OpenAIRE] [PubMed]

Burgin AJ, Hamilton SK Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways. Front Ecol Environ 2007;5:89–96.

Burow L, Woebken D, Marshall I et al.Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community. Geobiology 2014;12:221–30.24730641 [OpenAIRE] [PubMed]

Burow LC, Woebken D, Marshall IP et al.Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics. ISME J 2013;7:817–29.23190731 [OpenAIRE] [PubMed]

Caporaso JG, Lauber CL, Walters WA et al.Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 2012;6:1621–4.22402401 [OpenAIRE] [PubMed]

Cole JK, Hutchison JR, Renslow RS et al.Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions. Front Microbiol 2014;5:109. doi: 10.3389/fmicb.2014.00109.24778628 [OpenAIRE] [PubMed] [DOI]

de Wit R, Falcon LI, Charpy-Roubaud C Heterotrophic dinitrogen fixation (acetylene reduction) in phosphate-fertilised Microcoleus chthonoplastes microbial mat from the hypersaline inland lake ‘la Salada de Chiprana’(NE Spain). Hydrobiologia 2005;534:245–53. [OpenAIRE]

Delcher AL, Phillippy A, Carlton J et al.Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res 2002;30:2478–83.12034836 [OpenAIRE] [PubMed]

82 references, page 1 of 6
Abstract
Abstract Phototrophic mat communities are model ecosystems for studying energy cycling and elemental transformations because complete biogeochemical cycles occur over millimeter-to-centimeter scales. Characterization of energy and nutrient capture within hypersaline phototrophic mats has focused on specific processes and organisms; however, little is known about community-wide distribution of and linkages between these processes. To investigate energy and macronutrient capture and flow through a structured community, the spatial and organismal distribution of metabolic functions within a compact hypersaline mat community from Hot Lake have been broadly elucidate...
Subjects
free text keywords: element transformations, reconstructed genomes, Research Article, metagenomics, magnesium sulfate, phototrophic, hypersaline
82 references, page 1 of 6

Anantharaman K, Brown CT, Hug LA et al.Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nat Commun 2016;7:13219.27774985 [OpenAIRE] [PubMed]

Anderson G Some limnological features of a shallow saline meromictic lake. Limnol Oceanogr 1958;3:259–70.

Andrews S FastQC: A quality control tool for high throughput sequence data. Available online at http://www.bioinformatics.babraham.ac.uk/projects/fastqc, 2010.

Apprill A, McNally S, Parsons R et al.Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton. Aquatic Microbial Ecology 2015;75:129–37.

Babauta JT, Atci E, Ha PT et al.Localized electron transfer rates and microelectrode-based enrichment of microbial communities within a phototrophic microbial mat. Front Microbiol 2014;5:11. doi:10.3389/fmicb.2014.00011.24478768 [OpenAIRE] [PubMed] [DOI]

Berlemont R, Martiny AC Genomic potential for polysaccharide deconstruction in bacteria. Appl Environ Microb 2015;81:1513–9. [OpenAIRE]

Bernstein HC, Brislawn C, Renslow RS et al.Trade-offs between microbiome diversity and productivity in a stratified microbial mat. ISME J 2016; doi: 10.1038/ismej.2016.133. [OpenAIRE] [DOI]

Bolger AM, Lohse M, Usadel B Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 2014;30:2114–20.24695404 [OpenAIRE] [PubMed]

Burgin AJ, Hamilton SK Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways. Front Ecol Environ 2007;5:89–96.

Burow L, Woebken D, Marshall I et al.Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community. Geobiology 2014;12:221–30.24730641 [OpenAIRE] [PubMed]

Burow LC, Woebken D, Marshall IP et al.Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics. ISME J 2013;7:817–29.23190731 [OpenAIRE] [PubMed]

Caporaso JG, Lauber CL, Walters WA et al.Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 2012;6:1621–4.22402401 [OpenAIRE] [PubMed]

Cole JK, Hutchison JR, Renslow RS et al.Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions. Front Microbiol 2014;5:109. doi: 10.3389/fmicb.2014.00109.24778628 [OpenAIRE] [PubMed] [DOI]

de Wit R, Falcon LI, Charpy-Roubaud C Heterotrophic dinitrogen fixation (acetylene reduction) in phosphate-fertilised Microcoleus chthonoplastes microbial mat from the hypersaline inland lake ‘la Salada de Chiprana’(NE Spain). Hydrobiologia 2005;534:245–53. [OpenAIRE]

Delcher AL, Phillippy A, Carlton J et al.Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res 2002;30:2478–83.12034836 [OpenAIRE] [PubMed]

82 references, page 1 of 6
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