SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

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Page, Andrew J.; Taylor, Ben; Delaney, Aidan J.; Soares, Jorge; Seemann, Torsten; Keane, Jacqueline A.; Harris, Simon R.;
(2016)

Rapidly decreasing genome sequencing costs have led to a proportionate increase in the number of samples used in prokaryotic population studies. Extracting single nucleotide polymorphisms (SNPs) from a large whole genome alignment is now a routine task, but existing too... View more
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