publication . Other literature type . Article . 2018

Mitochondrial introgression and interspecies recombination in the Fusarium fujikuroi species complex

Gerda Fourie;
  • Published: 27 Feb 2018
  • Publisher: Springer Science and Business Media LLC
Abstract
The Fusarium fujikuroi species complex (FFSC) is an economically important monophyletic lineage in the genus Fusarium. Incongruence observed among mitochondrial gene trees, as well as the multiple non-orthologous copies of the internal transcribed spacer region of the ribosomal RNA genes, suggests that the origin and history of this complex likely involved interspecies gene flow. Based on this hypothesis, the mitochondrial genomes of non-conspecific species should harbour signatures of introgression or introgressive hybridization. The aim of this study was therefore to search for recombination between the mitochondrial genomes of different species in the FFSC. U...
Subjects
free text keywords: Article, evolutionary history, FFSC, heteroplasmy-associated mitochondrial recombination, hybridization, introgression, species concepts, Plant Science, Gene, Intergenic region, Genome, Coalescent theory, Evolutionary biology, Internal transcribed spacer, Gene flow, Mitochondrial DNA, Biology
94 references, page 1 of 7

Al-Reedy RM Malireddym R Dillman CB Kennell JC (2012) Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame. Fungal Genetics and Biology 49: 2–14.22178648 [PubMed]

Aylor DL Price EW Carbone I (2006) SNAP, combine and map modules for multilocus population genetic analysis. Bioinformatics 22: 1399–1401.16601003 [OpenAIRE] [PubMed]

Ballard JWO Whitlock MC (2004) The incomplete natural history of mitochondria. Molecular Ecology 13: 729–744.15012752 [PubMed]

Barr CM Neiman M Taylor DR (2005) Inheritance and recombination of mitochondrial genomes in plants, fungi and animals. New Phytologist 168: 39–50.16159319 [OpenAIRE] [PubMed]

Basse CW (2010) Mitochondrial inheritance in fungi. Current Opinion in Microbiology 13: 1–8.20044300 [OpenAIRE] [PubMed]

Brasier CM Kirk SA Pipe ND Buck KW (1998) Rare interspecific hybrids in natural populations of the Dutch elm disease pathogen Ophiostoma ulmi and O. novo-ulmi. Mycological Research 102: 45–57. [OpenAIRE]

Christin P-A Osborne CP Sage RF Arakaki M Edwards EJ (2011) C4: eudicots are not younger than C4 monocots. Jounal of Experimental Botany 62: 3171–3181.

Cunnington JH (2007) Organization of the mitochondrial genome of Fusarium oxysporum (anamorphic Hypocreales). Mycoscience 48: 403–406. [OpenAIRE]

Degnan JH Rosenberg NA (2009) Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in Ecology and Evolution 24: 332–340.19307040 [PubMed]

Delsuc F Brinkmann H Philippe H (2005) Phylogenomics and the reconstruction of the tree of life. Nature Reviews Genetics 6: 361–375. [OpenAIRE]

Desjardins AE Plattner RD Gordon TR (2000) Gibberella fujikuroi mating population A and Fusarium subglutinans from teosinte species and maize from Mexico and Central America. Mycological Research 104: 856–872.

Dowling DK Friberg U Lindell J (2008) Evolutionary implications of non-neutral mitochondrial genetic variation. Trends in Ecology and Evolution 23: 546–554.18722688 [PubMed]

Edwards EJ Osborne CP Strömberg AE Smith S (2010) The origins of C4 grasslands, integrating evolutionary and ecosystem science. Science 328: 578–591.20431003 [PubMed]

Excoffier L Yang Z (1999) Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees. Molecular Biology and Evolution 16: 1357–1368.10563016 [OpenAIRE] [PubMed]

Eyre-Walker A Smith NH Smith JM (1999) How clonal are human mitochondria? Proceedings of the Royal Society of London, B Biological Science 266: 477–483. [OpenAIRE]

94 references, page 1 of 7
Abstract
The Fusarium fujikuroi species complex (FFSC) is an economically important monophyletic lineage in the genus Fusarium. Incongruence observed among mitochondrial gene trees, as well as the multiple non-orthologous copies of the internal transcribed spacer region of the ribosomal RNA genes, suggests that the origin and history of this complex likely involved interspecies gene flow. Based on this hypothesis, the mitochondrial genomes of non-conspecific species should harbour signatures of introgression or introgressive hybridization. The aim of this study was therefore to search for recombination between the mitochondrial genomes of different species in the FFSC. U...
Subjects
free text keywords: Article, evolutionary history, FFSC, heteroplasmy-associated mitochondrial recombination, hybridization, introgression, species concepts, Plant Science, Gene, Intergenic region, Genome, Coalescent theory, Evolutionary biology, Internal transcribed spacer, Gene flow, Mitochondrial DNA, Biology
94 references, page 1 of 7

Al-Reedy RM Malireddym R Dillman CB Kennell JC (2012) Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame. Fungal Genetics and Biology 49: 2–14.22178648 [PubMed]

Aylor DL Price EW Carbone I (2006) SNAP, combine and map modules for multilocus population genetic analysis. Bioinformatics 22: 1399–1401.16601003 [OpenAIRE] [PubMed]

Ballard JWO Whitlock MC (2004) The incomplete natural history of mitochondria. Molecular Ecology 13: 729–744.15012752 [PubMed]

Barr CM Neiman M Taylor DR (2005) Inheritance and recombination of mitochondrial genomes in plants, fungi and animals. New Phytologist 168: 39–50.16159319 [OpenAIRE] [PubMed]

Basse CW (2010) Mitochondrial inheritance in fungi. Current Opinion in Microbiology 13: 1–8.20044300 [OpenAIRE] [PubMed]

Brasier CM Kirk SA Pipe ND Buck KW (1998) Rare interspecific hybrids in natural populations of the Dutch elm disease pathogen Ophiostoma ulmi and O. novo-ulmi. Mycological Research 102: 45–57. [OpenAIRE]

Christin P-A Osborne CP Sage RF Arakaki M Edwards EJ (2011) C4: eudicots are not younger than C4 monocots. Jounal of Experimental Botany 62: 3171–3181.

Cunnington JH (2007) Organization of the mitochondrial genome of Fusarium oxysporum (anamorphic Hypocreales). Mycoscience 48: 403–406. [OpenAIRE]

Degnan JH Rosenberg NA (2009) Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in Ecology and Evolution 24: 332–340.19307040 [PubMed]

Delsuc F Brinkmann H Philippe H (2005) Phylogenomics and the reconstruction of the tree of life. Nature Reviews Genetics 6: 361–375. [OpenAIRE]

Desjardins AE Plattner RD Gordon TR (2000) Gibberella fujikuroi mating population A and Fusarium subglutinans from teosinte species and maize from Mexico and Central America. Mycological Research 104: 856–872.

Dowling DK Friberg U Lindell J (2008) Evolutionary implications of non-neutral mitochondrial genetic variation. Trends in Ecology and Evolution 23: 546–554.18722688 [PubMed]

Edwards EJ Osborne CP Strömberg AE Smith S (2010) The origins of C4 grasslands, integrating evolutionary and ecosystem science. Science 328: 578–591.20431003 [PubMed]

Excoffier L Yang Z (1999) Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees. Molecular Biology and Evolution 16: 1357–1368.10563016 [OpenAIRE] [PubMed]

Eyre-Walker A Smith NH Smith JM (1999) How clonal are human mitochondria? Proceedings of the Royal Society of London, B Biological Science 266: 477–483. [OpenAIRE]

94 references, page 1 of 7
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publication . Other literature type . Article . 2018

Mitochondrial introgression and interspecies recombination in the Fusarium fujikuroi species complex

Gerda Fourie;