publication . Article . 2013

BacDive—the Bacterial Diversity Metadatabase

Söhngen, Carola; Bunk, Boyke; Podstawka, Adam; Gleim, Dorothea; Overmann, Jörg;
Open Access English
  • Published: 01 Nov 2013 Journal: Nucleic Acids Research, volume 42, issue Database issue, pages D592-D599 (issn: 0305-1048, eissn: 1362-4962, Copyright policy)
  • Publisher: Oxford University Press
Abstract
BacDive—the Bacterial Diversity Metadatabase (http://bacdive.dsmz.de) merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity. Currently (release 9/2013), BacDive contains entries for 23 458 strains and provides information on their taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology. Where available, links to access the respective biological resources are given. The majority of the BacDive data is manually annotated and curated. The BacDive portal offers an easy-to-use simple search and in addition powerful advanced search functionalities allowing to c...
Subjects
free text keywords: IV. Viruses, bacteria, protozoa and fungi

Nakamura, Y, Cochrane, G, Karsch-Mizrachi, I. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res.. 2013; 41: D21-D24 [PubMed]

Yilmaz, P, Kottmann, R, Field, D, Knight, R, Cole, JR, Amaral-Zettler, L, Gilbert, JA, Karsch-Mizrachi, I, Johnston, A, Cochrane, G. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat. Biotechnol.. 2011; 29: 415-420 [OpenAIRE] [PubMed]

Tuama, EÓ, Deck, J, Dröge, G, Döring, M, Field, D, Kottmann, R, Ma, J, Mori, H, Morrison, N, Sterk, P. Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012). Stand. Genomic Sci.. 2012; 7: 166-170 [OpenAIRE] [PubMed]

Lapage, S, Sneath, P, Lessel, E, Skerman, V, Seeliger, H, Clark, W. International Code of Nomenclature of Bacteria: Bacteriological Code. 1992

Tindall, BJ, Kampfer, P, Euzeby, JP, Oren, A. Valid publication of names of prokaryotes according to the rules of nomenclature: past history and current practice. Int. J. Syst. Evol. Microbiol.. 2006; 56: 2715-2720 [OpenAIRE] [PubMed]

Humble, MW, King, A, Phillips, I. API ZYM: a simple rapid system for the detection of bacterial enzymes. J. Clin. Pathol.. 1977; 30: 275-277 [OpenAIRE] [PubMed]

Schomburg, I, Chang, A, Placzek, S, Söhngen, C, Rother, M, Lang, M, Munaretto, C, Ulas, S, Stelzer, M, Grote, A. BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. Nucleic Acids Res.. 2013; 41: D764-D772 [OpenAIRE] [PubMed]

Hastings, J, de Matos, P, Dekker, A, Ennis, M, Harsha, B, Kale, N, Muthukrishnan, V, Owen, G, Turner, S, Williams, M. The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res.. 2013; 41: D456-D463 [OpenAIRE] [PubMed]

Reichenbach, H. Myxobacteria, producers of novel bioactive substances. J. Ind. Microbiol. Biotechnol.. 2001; 27: 149-156 [OpenAIRE] [PubMed]

Levenshtein, V. Binary codes capable of correcting deletions, insertions and reversals. Sov. Phys. Dokl.. 1966; 10: 707

Powered by OpenAIRE Open Research Graph
Any information missing or wrong?Report an Issue