publication . Article . Other literature type . 2017

Genomic Variation and Evolution of Vibrio parahaemolyticus ST36 over the Course of a Transcontinental Epidemic Expansion

Jaime Martinez-Urtaza; Ronny van Aerle; Michel Abanto; Julie Haendiges; Robert A. Myers; Joaquin Trinanes; Craig Baker-Austin; Narjol Gonzalez-Escalona;
Open Access English
  • Published: 01 Nov 2017 Journal: mBio (issn: 2150-7511, Copyright policy)
  • Publisher: American Society for Microbiology
  • Country: Spain
Abstract
ABSTRACT Vibrio parahaemolyticus is the leading cause of seafood-related infections with illnesses undergoing a geographic expansion. In this process of expansion, the most fundamental change has been the transition from infections caused by local strains to the surge of pandemic clonal types. Pandemic clone sequence type 3 (ST3) was the only example of transcontinental spreading until 2012, when ST36 was detected outside the region where it is endemic in the U.S. Pacific Northwest causing infections along the U.S. northeast coast and Spain. Here, we used genome-wide analyses to reconstruct the evolutionary history of the V. parahaemolyticus ST36 clone over the ...
Subjects
free text keywords: Microbiology, QR1-502, Research Article, Pacific Northwest, Vibrio parahaemolyticus, WGS, climate change, gastroenteritis, seafood, Fundamental change, clone (Java method), Vibrio, biology.organism_classification, biology, Ecology, Pandemic, Biological dispersal, Vibrio cholerae, medicine.disease_cause, medicine, Evolutionary divergence
69 references, page 1 of 5

1.Austin B, Austin D, Sutherland R, Thompson F, Swings J 2005 Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. Environ Microbiol 7:1488–1495. doi:10.1111/j.1462-2920.2005.00847.x.16104871 [OpenAIRE] [PubMed] [DOI]

2.Altekruse SF, Bishop RD, Baldy LM, Thompson SG, Wilson SA, Ray BJ, Griffin PM 2000 Vibrio gastroenteritis in the US Gulf of Mexico region: the role of raw oysters. Epidemiol Infect 124:489–495. doi:10.1017/S0950268899003714.10982073 [OpenAIRE] [PubMed] [DOI]

3.Dechet AM, Yu PA, Koram N, Painter J 2008 Nonfoodborne Vibrio infections: an important cause of morbidity and mortality in the United States, 1997–2006. Clin Infect Dis 46:970–976. doi:10.1086/529148.18444811 [OpenAIRE] [PubMed] [DOI]

4.DePaola A, Nordstrom JL, Bowers JC, Wells JG, Cook DW 2003 Seasonal abundance of total and pathogenic Vibrio parahaemolyticus in Alabama oysters. Appl Environ Microbiol 69:1521–1526. doi:10.1128/AEM.69.3.1521-1526.2003.12620838 [OpenAIRE] [PubMed] [DOI]

5.Baker-Austin C, Stockley L, Rangdale R, Martinez-Urtaza J 2010 Environmental occurrence and clinical impact of Vibrio vulnificus and Vibrio parahaemolyticus: a European perspective. Environ Microbiol Rep 2:7–18. doi:10.1111/j.1758-2229.2009.00096.x.23765993 [OpenAIRE] [PubMed] [DOI]

6.Martinez-Urtaza J, Bowers JC, Trinanes J, DePaola A 2010 Climate anomalies and the increasing risk of Vibrio parahaemolyticus and Vibrio vulnificus illnesses. Food Res Int 43:1780–1790. doi:10.1016/j.foodres.2010.04.001. [OpenAIRE] [DOI]

7.Centers for Disease Control and Prevention (CDC)2010 Preliminary FoodNet data on the incidence of infection with pathogens transmitted commonly through food—10 states, 2009. MMWR Morb Mortal Wkly Rep 59:418–422. https://www.cdc.gov/mmwr/preview/mmwrhtml/mm5914a2.htm.20395935 [PubMed]

8.Newton AE, Garrett N, Stroika SG, Halpin JL, Turnsek M, Mody RK 2014 Notes from the field: increase in Vibrio parahaemolyticus infections associated with consumption of Atlantic Coast shellfish−2013. MMWR Morb Mortal Wkly Rep 63:335–336. https://www.cdc.gov/mmwr/preview/mmwrhtml/mm6315a6.htm.24739344 [OpenAIRE] [PubMed]

9.Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, Roy SL, Jones JL, Griffin PM 2011 Foodborne illness acquired in the United States—major pathogens. Emerg Infect Dis 17:7–15. doi:10.3201/eid1701.P11101.21192848 [OpenAIRE] [PubMed] [DOI]

10.Baker-Austin C, Trinanes JA, Taylor NGH, Hartnell R, Siitonen A, Martinez-Urtaza J 2013 Emerging Vibrio risk at high latitudes in response to ocean warming. Nat Clim Chang 3:73–77. doi:10.1038/nclimate1628. [OpenAIRE] [DOI]

11.Nair GB, Ramamurthy T, Bhattacharya SK, Dutta B, Takeda Y, Sack DA 2007 Global dissemination of Vibrio parahaemolyticus serotype O3:K6 and its serovariants. Clin Microbiol Rev 20:39–48. doi:10.1128/CMR.00025-06.17223622 [OpenAIRE] [PubMed] [DOI]

12.González-Escalona N, Martinez-Urtaza J, Romero J, Espejo RT, Jaykus LA, DePaola A 2008 Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing. J Bacteriol 190:2831–2840. doi:10.1128/JB.01808-07.18281404 [OpenAIRE] [PubMed] [DOI]

13.Paranjpye R, Hamel OS, Stojanovski A, Liermann M 2012 Genetic diversity of clinical and environmental Vibrio parahaemolyticus strains from the Pacific Northwest. Appl Environ Microbiol 78:8631–8638. doi:10.1128/AEM.01531-12.23042162 [OpenAIRE] [PubMed] [DOI]

14.Turner JW, Paranjpye RN, Landis ED, Biryukov SV, González-Escalona N, Nilsson WB, Strom MS 2013 Population structure of clinical and environmental Vibrio parahaemolyticus from the Pacific Northwest coast of the United States. PLoS One 8:e55726. doi:10.1371/journal.pone.0055726.23409028 [OpenAIRE] [PubMed] [DOI]

15.Martinez-Urtaza J, Baker-Austin C, Jones JL, Newton AE, Gonzalez-Aviles GD, DePaola A 2013 Spread of Pacific Northwest Vibrio parahaemolyticus strain. N Engl J Med 369:1573–1574. doi:10.1056/NEJMc1305535.24131194 [OpenAIRE] [PubMed] [DOI]

69 references, page 1 of 5
Abstract
ABSTRACT Vibrio parahaemolyticus is the leading cause of seafood-related infections with illnesses undergoing a geographic expansion. In this process of expansion, the most fundamental change has been the transition from infections caused by local strains to the surge of pandemic clonal types. Pandemic clone sequence type 3 (ST3) was the only example of transcontinental spreading until 2012, when ST36 was detected outside the region where it is endemic in the U.S. Pacific Northwest causing infections along the U.S. northeast coast and Spain. Here, we used genome-wide analyses to reconstruct the evolutionary history of the V. parahaemolyticus ST36 clone over the ...
Subjects
free text keywords: Microbiology, QR1-502, Research Article, Pacific Northwest, Vibrio parahaemolyticus, WGS, climate change, gastroenteritis, seafood, Fundamental change, clone (Java method), Vibrio, biology.organism_classification, biology, Ecology, Pandemic, Biological dispersal, Vibrio cholerae, medicine.disease_cause, medicine, Evolutionary divergence
69 references, page 1 of 5

1.Austin B, Austin D, Sutherland R, Thompson F, Swings J 2005 Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. Environ Microbiol 7:1488–1495. doi:10.1111/j.1462-2920.2005.00847.x.16104871 [OpenAIRE] [PubMed] [DOI]

2.Altekruse SF, Bishop RD, Baldy LM, Thompson SG, Wilson SA, Ray BJ, Griffin PM 2000 Vibrio gastroenteritis in the US Gulf of Mexico region: the role of raw oysters. Epidemiol Infect 124:489–495. doi:10.1017/S0950268899003714.10982073 [OpenAIRE] [PubMed] [DOI]

3.Dechet AM, Yu PA, Koram N, Painter J 2008 Nonfoodborne Vibrio infections: an important cause of morbidity and mortality in the United States, 1997–2006. Clin Infect Dis 46:970–976. doi:10.1086/529148.18444811 [OpenAIRE] [PubMed] [DOI]

4.DePaola A, Nordstrom JL, Bowers JC, Wells JG, Cook DW 2003 Seasonal abundance of total and pathogenic Vibrio parahaemolyticus in Alabama oysters. Appl Environ Microbiol 69:1521–1526. doi:10.1128/AEM.69.3.1521-1526.2003.12620838 [OpenAIRE] [PubMed] [DOI]

5.Baker-Austin C, Stockley L, Rangdale R, Martinez-Urtaza J 2010 Environmental occurrence and clinical impact of Vibrio vulnificus and Vibrio parahaemolyticus: a European perspective. Environ Microbiol Rep 2:7–18. doi:10.1111/j.1758-2229.2009.00096.x.23765993 [OpenAIRE] [PubMed] [DOI]

6.Martinez-Urtaza J, Bowers JC, Trinanes J, DePaola A 2010 Climate anomalies and the increasing risk of Vibrio parahaemolyticus and Vibrio vulnificus illnesses. Food Res Int 43:1780–1790. doi:10.1016/j.foodres.2010.04.001. [OpenAIRE] [DOI]

7.Centers for Disease Control and Prevention (CDC)2010 Preliminary FoodNet data on the incidence of infection with pathogens transmitted commonly through food—10 states, 2009. MMWR Morb Mortal Wkly Rep 59:418–422. https://www.cdc.gov/mmwr/preview/mmwrhtml/mm5914a2.htm.20395935 [PubMed]

8.Newton AE, Garrett N, Stroika SG, Halpin JL, Turnsek M, Mody RK 2014 Notes from the field: increase in Vibrio parahaemolyticus infections associated with consumption of Atlantic Coast shellfish−2013. MMWR Morb Mortal Wkly Rep 63:335–336. https://www.cdc.gov/mmwr/preview/mmwrhtml/mm6315a6.htm.24739344 [OpenAIRE] [PubMed]

9.Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, Roy SL, Jones JL, Griffin PM 2011 Foodborne illness acquired in the United States—major pathogens. Emerg Infect Dis 17:7–15. doi:10.3201/eid1701.P11101.21192848 [OpenAIRE] [PubMed] [DOI]

10.Baker-Austin C, Trinanes JA, Taylor NGH, Hartnell R, Siitonen A, Martinez-Urtaza J 2013 Emerging Vibrio risk at high latitudes in response to ocean warming. Nat Clim Chang 3:73–77. doi:10.1038/nclimate1628. [OpenAIRE] [DOI]

11.Nair GB, Ramamurthy T, Bhattacharya SK, Dutta B, Takeda Y, Sack DA 2007 Global dissemination of Vibrio parahaemolyticus serotype O3:K6 and its serovariants. Clin Microbiol Rev 20:39–48. doi:10.1128/CMR.00025-06.17223622 [OpenAIRE] [PubMed] [DOI]

12.González-Escalona N, Martinez-Urtaza J, Romero J, Espejo RT, Jaykus LA, DePaola A 2008 Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing. J Bacteriol 190:2831–2840. doi:10.1128/JB.01808-07.18281404 [OpenAIRE] [PubMed] [DOI]

13.Paranjpye R, Hamel OS, Stojanovski A, Liermann M 2012 Genetic diversity of clinical and environmental Vibrio parahaemolyticus strains from the Pacific Northwest. Appl Environ Microbiol 78:8631–8638. doi:10.1128/AEM.01531-12.23042162 [OpenAIRE] [PubMed] [DOI]

14.Turner JW, Paranjpye RN, Landis ED, Biryukov SV, González-Escalona N, Nilsson WB, Strom MS 2013 Population structure of clinical and environmental Vibrio parahaemolyticus from the Pacific Northwest coast of the United States. PLoS One 8:e55726. doi:10.1371/journal.pone.0055726.23409028 [OpenAIRE] [PubMed] [DOI]

15.Martinez-Urtaza J, Baker-Austin C, Jones JL, Newton AE, Gonzalez-Aviles GD, DePaola A 2013 Spread of Pacific Northwest Vibrio parahaemolyticus strain. N Engl J Med 369:1573–1574. doi:10.1056/NEJMc1305535.24131194 [OpenAIRE] [PubMed] [DOI]

69 references, page 1 of 5
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