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Cheetah: A Computational Toolkit for Cybergenetic Control

Pedone, Elisa; de Cesare, Irene; Zamora-Chimal, Criseida G.; Haener, David; Postiglione, Lorena; La Regina, Antonella; Shannon, Barbara; Savery, Nigel J.; Grierson, Claire S.; di Bernardo, Mario; ...
Open Access
Abstract
Abstract Advances in microscopy, microfluidics, and optogenetics enable single-cell monitoring and environmental regulation and offer the means to control cellular phenotypes. The development of such systems is challenging and often results in bespoke setups that hinder reproducibility. To address this, we introduce Cheetah, a flexible computational toolkit that simplifies the integration of real-time microscopy analysis with algorithms for cellular control. Central to the platform is an image segmentation system based on the versatile U-Net convolutional neural network. This is supplemented with functionality to robustly count, characterize, and control cells ...
Persistent Identifiers
Funded by
EC| COSY-BIO
Project
COSY-BIO
Control Engineering of Biological Systems for Reliable Synthetic Biology Applications
  • Funder: European Commission (EC)
  • Project Code: 766840
  • Funding stream: H2020
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