Whole Genome Phylogenetic Tree Reconstruction using Colored de Bruijn Graphs

Other literature type English OPEN
Lyman, Cole;
  • Related identifiers: doi: 10.6084/m9.figshare.5532751.v1
  • Subject: Applied Computer Science | Phylogeny and Comparative Analysis | Phylogenetics: methods | Whole Genome DNA Sequence Analysis | Whole genome comparisons | de bruijn graph, colored de bruijn graph, index, alignment, mapping, genome, transcriptome

We present <i>kleuren</i>, a novel assembly-free method to reconstruct phylogenetic trees using the Colored de Bruijn Graph. <i>kleuren</i> works by constructing the Colored de Bruijn Graph and then traversing it, finding bubble structures in the graph that provide phyl... View more
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