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Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains

Authors: J.A. Newman; Jean-Philippe Lambert; Pavel Savitsky; James D.R. Knight; Gagan D. Gupta; Hala Abdouni; Sarah Picaud; +17 Authors

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains

Abstract

Targeting bromodomains (BRDs) of the bromo-and-extra-terminal (BET) family offers opportunities for therapeutic intervention in cancer and other diseases. Here, we profile the interactomes of BRD2, BRD3, BRD4, and BRDT following treatment with the pan-BET BRD inhibitor JQ1, revealing broad rewiring of the interaction landscape, with three distinct classes of behavior for the 603 unique interactors identified. A group of proteins associate in a JQ1-sensitive manner with BET BRDs through canonical and new binding modes, while two classes of extra-terminal (ET)-domain binding motifs mediate acetylation-independent interactions. Last, we identify an unexpected increase in several interactions following JQ1 treatment that define negative functions for BRD3 in the regulation of rRNA synthesis and potentially RNAPII-dependent gene expression that result in decreased cell proliferation. Together, our data highlight the contributions of BET protein modules to their interactomes allowing for a better understanding of pharmacological rewiring in response to JQ1.

Countries
Switzerland, United Kingdom
Keywords

Models, Molecular, Proteomics, Protein Conformation, 610 Medicine & health, Antineoplastic Agents, Cell Cycle Proteins, Protein Serine-Threonine Kinases, Article, 1307 Cell Biology, Neoplasms, 1312 Molecular Biology, Humans, Protein Interaction Domains and Motifs, Molecular Targeted Therapy, Protein Interaction Maps, Cell Proliferation, Nuclear Proteins, RNA-Binding Proteins, Azepines, 10174 Clinic for Gynecology, Gene Expression Regulation, Neoplastic, HEK293 Cells, K562 Cells, HeLa Cells, Protein Binding

  • BIP!
    Impact byBIP!
    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    141
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
141
Top 1%
Top 10%
Top 1%
Green
hybrid