Diversity and abundance of ammonia oxidizing archaea in tropical compost systems
- Published: 01 Jul 2012 Journal: Frontiers in Microbiology, volume 3 (eissn: 1664-302X,
Copyright policy)
- Publisher: Frontiers Media SA
Adair K. L. Schwartz E. (2008). Evidence that ammonia-oxidizing archaea are more abundant than ammonia-oxidizing bacteria in semiarid soils of northern Arizona, USA. Microb. Ecol. 56, 420–426. 10.1007/s00248-007-9360-9 18204798 [OpenAIRE] [PubMed] [DOI]
Anastasi A. Varese G. C. Marchisio V. F. (2005). Isolation and identification of fungal communities in compost and vermicompost. Mycologia 97, 33–44. 10.3852/mycologia.97.1.33 16389954 [PubMed] [DOI]
Arezi B. Xing W. Sorge J. A. Hogrefe H. H. (2003). Amplification efficiency of thermostable DNA polymerases. Anal. Biochem. 321, 226–235. 10.1016/S0003-2697(03)00465-2 14511688 [OpenAIRE] [PubMed] [DOI]
Barrington S. Choiniere D. Trigui M. Knight W. (2002). Effect of carbon source on compost nitrogen and carbon losses. Bioresour. Technol. 83, 189–194. 12094792 [OpenAIRE] [PubMed]
Bates S. T. Berg-Lyons D. Caporaso J. G. Walters W. A. Knight R. Fierer N. (2010). Examining the global distribution of dominant archaeal populations in soil. ISME J. 5, 908–917. 10.1038/ismej.2010.171 21085198 [OpenAIRE] [PubMed] [DOI]
Beman J. M. Popp B. N. Francis C. A. (2008). Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2, 429–441. 10.1038/ismej.2007.118 18200070 [OpenAIRE] [PubMed] [DOI]
Bernal M. P. Alburquerque J. A. Moral R. (2009). Composting of animal manures and chemical criteria for compost maturity assessment. A review. Bioresour. Technol. 100, 5444–5453. 10.1016/j.biortech.2008.11.027 19119002 [OpenAIRE] [PubMed] [DOI]
Blainey P. C. Mosier A. C. Potanina A. Francis C. A. Quake S. R. (2011). Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS ONE 6:e16626. 10.1371/journal.pone.0016626 21364937 [OpenAIRE] [PubMed] [DOI]
Caffrey J. M. Bano N. Kalanetra K. Hollibaugh J. T. (2007). Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J. 1, 660–662. 10.1038/ismej.2007.79 18043673 [OpenAIRE] [PubMed] [DOI]
Charest M. H. Antoun H. Beuchamp C. J. (2004). Dynamics of water-soluble carbon substances and microbial populations during the composting of de-inking paper sludge. Bioresour. Technol. 91, 53–67. 10.1016/S0960-8524(03)00155-X 14585622 [OpenAIRE] [PubMed] [DOI]
Chen X. Zhu Y. Xia Y. Shen J. He J. (2008). Ammonia-oxidising archaea:important players in paddy rhizosphere soil? Environ. Microbiol. 10, 1978–1987. 10.1111/j.1462-2920.2008.01613.x 18430011 [OpenAIRE] [PubMed] [DOI]
De La Torre J. R. Walker C. B. Ingalls A. E. Konneke M. Stahl D. A. (2008). Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ. Microbiol. 10, 810–818. 10.1111/j.1462-2920.2007.01506.x 18205821 [OpenAIRE] [PubMed] [DOI]
Di H. J. Cameron K. C. Shen J. P. Winefield C. S. O'Callaghan M. Bowatte S. He J. Z. (2010). Ammonia-oxidizing bacteria and archaea grow under contrasting soil nitrogen conditions. FEMS Microbiol. Ecol. 72, 386–394. 10.1111/j.1574-6941.2010.00861.x 20370827 [OpenAIRE] [PubMed] [DOI]
Erguder T. H. Boon N. Wittebolle L. Marzorati M. Verstraete W. (2009). Environmental factors shaping the ecological niches of ammonia-oxidizing archaea. FEMS Microbiol. Rev. 33, 855–869. 10.1111/j.1574-6976.2009.00179.x 19453522 [OpenAIRE] [PubMed] [DOI]
Francis C. A. Roberts K. J. Beman J. M. Santoro A. E. Oakley B. B. (2005). Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. U.S.A. 102, 14683–14688. 10.1073/pnas.0506625102 16186488 [OpenAIRE] [PubMed] [DOI]
Adair K. L. Schwartz E. (2008). Evidence that ammonia-oxidizing archaea are more abundant than ammonia-oxidizing bacteria in semiarid soils of northern Arizona, USA. Microb. Ecol. 56, 420–426. 10.1007/s00248-007-9360-9 18204798 [OpenAIRE] [PubMed] [DOI]
Anastasi A. Varese G. C. Marchisio V. F. (2005). Isolation and identification of fungal communities in compost and vermicompost. Mycologia 97, 33–44. 10.3852/mycologia.97.1.33 16389954 [PubMed] [DOI]
Arezi B. Xing W. Sorge J. A. Hogrefe H. H. (2003). Amplification efficiency of thermostable DNA polymerases. Anal. Biochem. 321, 226–235. 10.1016/S0003-2697(03)00465-2 14511688 [OpenAIRE] [PubMed] [DOI]
Barrington S. Choiniere D. Trigui M. Knight W. (2002). Effect of carbon source on compost nitrogen and carbon losses. Bioresour. Technol. 83, 189–194. 12094792 [OpenAIRE] [PubMed]
Bates S. T. Berg-Lyons D. Caporaso J. G. Walters W. A. Knight R. Fierer N. (2010). Examining the global distribution of dominant archaeal populations in soil. ISME J. 5, 908–917. 10.1038/ismej.2010.171 21085198 [OpenAIRE] [PubMed] [DOI]
Beman J. M. Popp B. N. Francis C. A. (2008). Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2, 429–441. 10.1038/ismej.2007.118 18200070 [OpenAIRE] [PubMed] [DOI]
Bernal M. P. Alburquerque J. A. Moral R. (2009). Composting of animal manures and chemical criteria for compost maturity assessment. A review. Bioresour. Technol. 100, 5444–5453. 10.1016/j.biortech.2008.11.027 19119002 [OpenAIRE] [PubMed] [DOI]
Blainey P. C. Mosier A. C. Potanina A. Francis C. A. Quake S. R. (2011). Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS ONE 6:e16626. 10.1371/journal.pone.0016626 21364937 [OpenAIRE] [PubMed] [DOI]
Caffrey J. M. Bano N. Kalanetra K. Hollibaugh J. T. (2007). Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J. 1, 660–662. 10.1038/ismej.2007.79 18043673 [OpenAIRE] [PubMed] [DOI]
Charest M. H. Antoun H. Beuchamp C. J. (2004). Dynamics of water-soluble carbon substances and microbial populations during the composting of de-inking paper sludge. Bioresour. Technol. 91, 53–67. 10.1016/S0960-8524(03)00155-X 14585622 [OpenAIRE] [PubMed] [DOI]
Chen X. Zhu Y. Xia Y. Shen J. He J. (2008). Ammonia-oxidising archaea:important players in paddy rhizosphere soil? Environ. Microbiol. 10, 1978–1987. 10.1111/j.1462-2920.2008.01613.x 18430011 [OpenAIRE] [PubMed] [DOI]
De La Torre J. R. Walker C. B. Ingalls A. E. Konneke M. Stahl D. A. (2008). Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ. Microbiol. 10, 810–818. 10.1111/j.1462-2920.2007.01506.x 18205821 [OpenAIRE] [PubMed] [DOI]
Di H. J. Cameron K. C. Shen J. P. Winefield C. S. O'Callaghan M. Bowatte S. He J. Z. (2010). Ammonia-oxidizing bacteria and archaea grow under contrasting soil nitrogen conditions. FEMS Microbiol. Ecol. 72, 386–394. 10.1111/j.1574-6941.2010.00861.x 20370827 [OpenAIRE] [PubMed] [DOI]
Erguder T. H. Boon N. Wittebolle L. Marzorati M. Verstraete W. (2009). Environmental factors shaping the ecological niches of ammonia-oxidizing archaea. FEMS Microbiol. Rev. 33, 855–869. 10.1111/j.1574-6976.2009.00179.x 19453522 [OpenAIRE] [PubMed] [DOI]
Francis C. A. Roberts K. J. Beman J. M. Santoro A. E. Oakley B. B. (2005). Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. U.S.A. 102, 14683–14688. 10.1073/pnas.0506625102 16186488 [OpenAIRE] [PubMed] [DOI]