publication . Article . Other literature type . 2017

In silico Analysis of osr40c1 Promoter Sequence Isolated from Indica Variety Pokkali

de Silva, W.S.I.; Perera, M.M.N.; Perera, K.L.N.S.; Wickramasuriya, A.M.; Jayasekera, G.A.U.;

Open Access English

Published: 01 Jul 2017 Journal: Rice Science (issn: 1672-6308,

Publisher: Elsevier

Summary

Abstract

Abstract The promoter region of a drought and abscisic acid (ABA) inducible gene, osr40c1, was isolated from a salt-tolerant indica rice variety Pokkali, which is 670 bp upstream of the putative translation start codon. In silico promoter analysis of resulted sequence showed that at least 15 types of putative motifs were distributed within the sequence, including two types of common promoter elements, TATA and CAAT boxes. Additionally, several putative cis-acing regulatory elements which may be involved in regulation of osr40c1 expression under different conditions were found in the 5′-upstream region of osr40c1. These are ABA-responsive element, light-responsiv...

doi: 10.1016/j.rsci.2016.11.002

Subjects

Medical Subject Headings: food and beverages

free text keywords: osr40c1, promoter, cis-acting regulatory element, rice, Plant culture, SB1-1110, Transformation (genetics), Botany, In silico, Gene, Genetics, Gene expression, Start codon, Abiotic stress, Response element, Biology

Related Organizations

University of Colombo
Sri Lanka
Genentech

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