publication . Article . Other literature type . 2019

Mapping the ‘early salinity response’ triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach

Lakra, Nita; Kaur, Charanpreet; Singla-Pareek, Sneh Lata; Pareek, Ashwani;
Open Access English
  • Published: 30 Jan 2019 Journal: Rice (issn: 1939-8425, eissn: 1939-8433, Copyright policy)
  • Publisher: SpringerOpen
Abstract
Background To delineate the adaptive mechanisms operative under salinity stress, it is essential to study plant responses at the very early stages of stress which are very crucial for governing plant survival and adaptation. We believe that it is the initial perception and response phase which sets the foundation for stress adaptation in rice seedlings where plants can be considered to be in a state of osmotic shock and ion buildup. Results An isobaric Tags for Relative and Absolute Quantitation (iTRAQ) approach was used to analyze the pre-existing differences as well as the very early salt shock responsive changes in the proteome of seedlings of contrasting ric...
Subjects
Medical Subject Headings: food and beverages
free text keywords: iTRAQ, Proteomics, Pokkali, Rice, Salinity, Seedlings, Plant culture, SB1-1110, Original Article, Agronomy and Crop Science, Plant Science, Soil Science, Biology, Osmotic shock, Proteome, Citric acid cycle, Shoot, Photosynthesis, Botany, Biochemistry, Superoxide dismutase, biology.protein, RuBisCO, Glutamate dehydrogenase
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40 references, page 1 of 3

Athwal, GS, Pearson, J, Laurie, S. Regulation of glutamate dehydrogenase activity by manipulation of nucleotide supply in Daucus carota suspension cultures. Physiol Plant. 1997; 101: 503-509 [OpenAIRE] [DOI]

Bajji, M, Kinet, JM, Lutts, S. The use of the electrolyte leakage method for assessing cell membrane stability as a water stress tolerance test in durum wheat. Plant Growth Regul. 2002; 36: 61-70 [DOI]

Damaris, RN, Li, M, Liu, Y, Chen, X, Murage, H, Yang, P. A proteomic analysis of salt stress response in seedlings of two African rice cultivars. Biochim Biophys Acta (BBA)-proteins. Proteomics. 2016; 1864: 1570-1578 [OpenAIRE]

Daudi, A, O’Brien, JA. Detection of hydrogen peroxide by DAB staining in Arabidopsis leaves. Bio Protocol. 2012; 2: e263 [OpenAIRE] [DOI]

Dorion, S, Matton, DP, Rivoal, J. Characterization of a cytosolic nucleoside diphosphate kinase associated with cell division and growth in potato. Planta. 2006; 224: 108-124 [OpenAIRE] [PubMed] [DOI]

El-Shabrawi, H, Kumar, B, Kaul, T, Reddy, MK, Singla-Pareek, SL, Sopory, SK. Redox homeostasis, antioxidant defense, and methylglyoxal detoxification as markers for salt tolerance in Pokkali rice. Protoplasma. 2010; 245: 85-96 [OpenAIRE] [PubMed] [DOI]

Fageria, NK. Yield physiology of rice. J Plant Nutr. 2007; 30: 843-879 [OpenAIRE] [DOI]

Fox, TC, Guerinot, ML. Molecular biology of cation transport in plants. Annu Rev Plant Physiol Plant Mol Biol. 1998; 49: 669-696 [OpenAIRE] [PubMed] [DOI]

Garthwaite, AJ, von Bothmer, R, Colmer, TD. Salt tolerance in wild Hordeum species is associated with restricted entry of Na+ and cl− into the shoots. J Exp Bot. 2005; 56: 2365-2378 [OpenAIRE] [PubMed] [DOI]

Ghosh, D, Li, Z, Tan, XF, Lim, TK, Mao, Y, Lin, Q. ITRAQ based quantitative proteomics approach validated the role of calcyclin binding protein (CacyBP) in promoting colorectal cancer metastasis. Mol Cell Proteomics. 2013; 12: 1865-1880 [OpenAIRE] [PubMed] [DOI]

Gupta, BK, Sahoo, KK, Ghosh, A, Tripathi, AK, Anwar, K, Das, P, Singh, AK, Pareek, A, Sopory, SK, Singla-Pareek, SL. Manipulation of glyoxalase pathway confers tolerance to multiple stresses in rice. Plant Cell Environ. 2018; 41: 1186-1200 [OpenAIRE] [PubMed] [DOI]

Hasunuma, K, Yabe, N, Yoshida, Y, Ogura, Y, Hamada, T. Putative functions of nucleoside diphosphate kinase in plants and fungi. J Bioenerg Biomembr. 2003; 35: 57-65 [OpenAIRE] [PubMed] [DOI]

Jaarsma R, de Vries RSM, de Boer AH (2013) Effect of salt stress on growth, Na+ accumulation and proline metabolism in potato (Solanum tuberosum) cultivars. PLoS One 8:e60183.

Joshi, R, Sahoo, KK, Tripathi, AK, Kumar, R, Gupta, BK, Pareek, A, Singla-Pareek, SL. Knockdown of an inflorescence meristem-specific cytokinin oxidase-OsCKX2 in rice reduces yield penalty under salinity stress condition. Plant Cell Environ. 2018; 41: 936-946 [OpenAIRE] [PubMed] [DOI]

Kaur, N, Dhawan, M, Sharma, I, Pati, PK. Interdependency of reactive oxygen species generating and scavenging system in salt sensitive and salt tolerant cultivars of rice. BMC Plant Biol. 2016; 16: 131 [OpenAIRE] [PubMed] [DOI]

40 references, page 1 of 3
Abstract
Background To delineate the adaptive mechanisms operative under salinity stress, it is essential to study plant responses at the very early stages of stress which are very crucial for governing plant survival and adaptation. We believe that it is the initial perception and response phase which sets the foundation for stress adaptation in rice seedlings where plants can be considered to be in a state of osmotic shock and ion buildup. Results An isobaric Tags for Relative and Absolute Quantitation (iTRAQ) approach was used to analyze the pre-existing differences as well as the very early salt shock responsive changes in the proteome of seedlings of contrasting ric...
Subjects
Medical Subject Headings: food and beverages
free text keywords: iTRAQ, Proteomics, Pokkali, Rice, Salinity, Seedlings, Plant culture, SB1-1110, Original Article, Agronomy and Crop Science, Plant Science, Soil Science, Biology, Osmotic shock, Proteome, Citric acid cycle, Shoot, Photosynthesis, Botany, Biochemistry, Superoxide dismutase, biology.protein, RuBisCO, Glutamate dehydrogenase
Download fromView all 4 versions
Rice
Article . 2019
Rice
Article . 2019
Provider: Crossref
Rice
Article
Provider: UnpayWall
40 references, page 1 of 3

Athwal, GS, Pearson, J, Laurie, S. Regulation of glutamate dehydrogenase activity by manipulation of nucleotide supply in Daucus carota suspension cultures. Physiol Plant. 1997; 101: 503-509 [OpenAIRE] [DOI]

Bajji, M, Kinet, JM, Lutts, S. The use of the electrolyte leakage method for assessing cell membrane stability as a water stress tolerance test in durum wheat. Plant Growth Regul. 2002; 36: 61-70 [DOI]

Damaris, RN, Li, M, Liu, Y, Chen, X, Murage, H, Yang, P. A proteomic analysis of salt stress response in seedlings of two African rice cultivars. Biochim Biophys Acta (BBA)-proteins. Proteomics. 2016; 1864: 1570-1578 [OpenAIRE]

Daudi, A, O’Brien, JA. Detection of hydrogen peroxide by DAB staining in Arabidopsis leaves. Bio Protocol. 2012; 2: e263 [OpenAIRE] [DOI]

Dorion, S, Matton, DP, Rivoal, J. Characterization of a cytosolic nucleoside diphosphate kinase associated with cell division and growth in potato. Planta. 2006; 224: 108-124 [OpenAIRE] [PubMed] [DOI]

El-Shabrawi, H, Kumar, B, Kaul, T, Reddy, MK, Singla-Pareek, SL, Sopory, SK. Redox homeostasis, antioxidant defense, and methylglyoxal detoxification as markers for salt tolerance in Pokkali rice. Protoplasma. 2010; 245: 85-96 [OpenAIRE] [PubMed] [DOI]

Fageria, NK. Yield physiology of rice. J Plant Nutr. 2007; 30: 843-879 [OpenAIRE] [DOI]

Fox, TC, Guerinot, ML. Molecular biology of cation transport in plants. Annu Rev Plant Physiol Plant Mol Biol. 1998; 49: 669-696 [OpenAIRE] [PubMed] [DOI]

Garthwaite, AJ, von Bothmer, R, Colmer, TD. Salt tolerance in wild Hordeum species is associated with restricted entry of Na+ and cl− into the shoots. J Exp Bot. 2005; 56: 2365-2378 [OpenAIRE] [PubMed] [DOI]

Ghosh, D, Li, Z, Tan, XF, Lim, TK, Mao, Y, Lin, Q. ITRAQ based quantitative proteomics approach validated the role of calcyclin binding protein (CacyBP) in promoting colorectal cancer metastasis. Mol Cell Proteomics. 2013; 12: 1865-1880 [OpenAIRE] [PubMed] [DOI]

Gupta, BK, Sahoo, KK, Ghosh, A, Tripathi, AK, Anwar, K, Das, P, Singh, AK, Pareek, A, Sopory, SK, Singla-Pareek, SL. Manipulation of glyoxalase pathway confers tolerance to multiple stresses in rice. Plant Cell Environ. 2018; 41: 1186-1200 [OpenAIRE] [PubMed] [DOI]

Hasunuma, K, Yabe, N, Yoshida, Y, Ogura, Y, Hamada, T. Putative functions of nucleoside diphosphate kinase in plants and fungi. J Bioenerg Biomembr. 2003; 35: 57-65 [OpenAIRE] [PubMed] [DOI]

Jaarsma R, de Vries RSM, de Boer AH (2013) Effect of salt stress on growth, Na+ accumulation and proline metabolism in potato (Solanum tuberosum) cultivars. PLoS One 8:e60183.

Joshi, R, Sahoo, KK, Tripathi, AK, Kumar, R, Gupta, BK, Pareek, A, Singla-Pareek, SL. Knockdown of an inflorescence meristem-specific cytokinin oxidase-OsCKX2 in rice reduces yield penalty under salinity stress condition. Plant Cell Environ. 2018; 41: 936-946 [OpenAIRE] [PubMed] [DOI]

Kaur, N, Dhawan, M, Sharma, I, Pati, PK. Interdependency of reactive oxygen species generating and scavenging system in salt sensitive and salt tolerant cultivars of rice. BMC Plant Biol. 2016; 16: 131 [OpenAIRE] [PubMed] [DOI]

40 references, page 1 of 3
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