publication . Other literature type . Article . 2018

Association Mapping for Important Agronomic Traits in Safflower (Carthamus tinctorius L.) Core Collection Using Microsatellite Markers

Ambreen, Heena; Kumar, Shivendra; Kumar, Amar; Agarwal, Manu; Jagannath, Arun; Goel, Shailendra;
Open Access
  • Published: 29 Mar 2018
  • Publisher: Frontiers Media SA
Carthamus tinctorius L. (safflower) is an important oilseed crop producing seed oil rich in unsaturated fatty acids. Scarcity of identified marker-trait associations is a major limitation toward development of successful marker-assisted breeding programs in safflower. In the present study, a safflower panel (CartAP) comprising 124 accessions derived from two core collections was assayed for its suitability for association mapping. Genotyping of CartAP using microsatellite markers revealed significant genetic diversity indicated by Shannon information index (H = 0.7537) and Nei's expected heterozygosity (I = 0.4432). In Principal Coordinate Analysis, the CartAP a...
free text keywords: Plant Science, safflower, association mapping, SSR markers, core collections, population structure, kinship analysis, Plant culture, SB1-1110, Original Research
73 references, page 1 of 5

Abdurakhmonov I. Y.Abdukarimov A. (2008). Application of association mapping to understanding the genetic diversity of plant germplasm resources. Int. J. Plant Genomics 2008:574927. 10.1155/2008/574927 18551188 [OpenAIRE] [PubMed] [DOI]

Agrama H. A.Eizenga G. C.Yan W. (2007). Association mapping of yield and its components in rice cultivars. Mol. Breed. 19, 341–356. 10.1007/s11032-006-9066-6 [OpenAIRE] [DOI]

Ambreen H.Kumar S.Variath M. T.Joshi G.Bali S.Agarwal M.. (2015). Development of genomic microsatellite markers in Carthamus tinctorius L.(Safflower) using next generation sequencing and assessment of their cross-species transferability and utility for diversity analysis. PLoS ONE 10:e0135443. 10.1371/journal.pone.0135443 26287743 [OpenAIRE] [PubMed] [DOI]

Amini F.Saeidi G.Arzani A. (2008). Study of genetic diversity in safflower genotypes using agro-morphological traits and RAPD markers. Euphytica 163, 21–30. 10.1007/s10681-007-9556-6 [OpenAIRE] [DOI]

Ashri A. (1975). Evaluation of the germplasm collection of safflower, Carthamus tinctorius L. V. Distribution and regional divergence for morphological characters. Euphytica 24, 651–659. [OpenAIRE]

Bahrami F.Arzani A.Karimi V. (2014). Evaluation of yield-based drought tolerance indices for screening safflower genotypes. Agron. J. 106, 1219–1224. 10.2134/agronj13.0387 [OpenAIRE] [DOI]

Barati M.Arzani A. (2012). Genetic diversity revealed by EST-SSR markers in cultivated and wild safflower. Biochem. Syst. Ecol. 44, 117–123. 10.1016/j.bse.2012.04.013 [OpenAIRE] [DOI]

Blair M. W.Díaz L. M.Buendía H. F.Duque M. C. (2009). Genetic diversity, seed size associations and population structure of a core collection of common beans (Phaseolus vulgaris L.). Theor. Appl. Genet. 119, 955–972. 10.1007/s00122-009-1064-8 19688198 [OpenAIRE] [PubMed] [DOI]

Bowers J. E.Pearl S. A.Burke J. M. (2016). Genetic mapping of millions of SNPs in safflower (Carthamus tinctorius L.) via whole-genome resequencing. Genes Genom. Genet. 6, 2203–2211. 10.1534/g3.115.026690 27226165 [OpenAIRE] [PubMed] [DOI]

Bradbury P. J.Zhang Z.Kroon D. E.Casstevens T. M.Ramdoss Y.Buckler E. S. (2007). TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23, 2633–2635. 10.1093/bioinformatics/btm308 17586829 [OpenAIRE] [PubMed] [DOI]

Breseghello F.Sorrells M. E. (2006). Association analysis as a strategy for improvement of quantitative traits in plants. Crop Sci. 46, 1323–1330. 10.2135/cropsci2005.09-0305 [OpenAIRE] [DOI]

Carlsson A. S.Zhu L. H.Andersson M.Hofvander P. (2014). Platform crops amenable to genetic engineering–a requirement for successful production of bio-industrial oils through genetic engineering. Biocatal. Agric. Biotechnol. 3, 58–64. 10.1016/j.bcab.2013.12.007 [OpenAIRE] [DOI]

Chapman M. A.Hvala J.Strever J.Burke J. M. (2010). Population genetic analysis of safflower (Carthamus tinctorius L.; Asteraceae) reveals a near Eastern origin and five centers of diversity. Am. J. Bot. 97, 831– 840. 10.3732/ajb.0900137 21622448 [OpenAIRE] [PubMed] [DOI]

Chapman M. A.Hvala J.Strever J.Matvienko M.Kozik A.Michelmore R. W.. (2009). Development, polymorphism, and cross-taxon utility of EST–SSR markers from safflower (Carthamus tinctorius L.). Theor. Appl. Genet.120, 85–91. 10.1007/s00122-009-1161-8 19820913 [OpenAIRE] [PubMed] [DOI]

Dajue L.Mündel H. H. (1996). Safflower Carthamus tinctorius L. Promoting the Conservation and Use of Underutilized and Neglected Crops. 7. Institute of Plant Genetics and Crop Plant Research, Gatersleben. International Plant Genetic Resources Institute, Rome.

73 references, page 1 of 5
Powered by OpenAIRE Research Graph
Any information missing or wrong?Report an Issue