The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

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Orchard, Sandra ; Ammari, Mais ; Aranda, Bruno ; Breuza, Lionel ; Briganti, Leonardo ; Broackes-Carter, Fiona ; Campbell, Nancy H. ; Chavali, Gayatri ; Chen, Carol ; del-Toro, Noemi ; Duesbury, Margaret ; Dumousseau, Marine ; Galeota, Eugenia ; Hinz, Ursula ; Iannuccelli, Marta ; Jagannathan, Sruthi ; Jimenez, Rafael ; Khadake, Jyoti ; Lagreid, Astrid ; Licata, Luana ; Lovering, Ruth C. ; Meldal, Birgit ; Melidoni, Anna N. ; Milagros, Mila ; Peluso, Daniele ; Perfetto, Livia ; Porras, Pablo ; Raghunath, Arathi ; Ricard-Blum, Sylvie ; Roechert, Bernd ... view all 35 authors (2017)
  • Publisher: OXFORD UNIV PRESS
  • Journal: volume 42, issue D1, pages D358-D363 (issn: 0305-1048, eissn: 1362-4962)
  • Related identifiers: pmc: PMC3965093, doi: 10.1093/nar/gkt1115
  • Subject: Software; Protein Interaction Mapping; Databases, Protein; Internet | II. Protein sequence and structure, motifs and domains | Settore BIO/18 - Genetica
    acm: ComputingMethodologies_PATTERNRECOGNITION | Data_GENERAL | Data_CODINGANDINFORMATIONTHEORY | ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION

IntAct (freely available at http://www.ebi.ac.uk/intact) is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data depositions. IntAct has developed a sophisticated web-based curation tool, capab... View more
  • References (28)
    28 references, page 1 of 3

    1. The UniProt Consortium. (2013) Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Res., 41, D43-D47.

    2. Kerrien,S., Aranda,B., Breuza,L., Bridge,A., Broackes-Carter,F., Chen,C., Duesbury,M., Dumousseau,M., Feuermann,M., Hinz,U. et al. (2013) The IntAct molecular interaction database in 2012. Nucleic Acids Res., 41, D43-D47.

    3. Saito,R., Smoot,M.E., Ono,K., Ruscheinski,J., Wang,P.L., Lotia,S., Pico,A.R., Bader,G.D. and Ideker,T. (2012) A travel guide to Cytoscape plugins. Nat. Methods, 9, 1069-1076.

    4. Kerrien,S., Orchard,S., Montecchi-Palazzi,L., Aranda,B., Quinn,A.F., Vinod,N., Bader,G.D., Xenarios,I., Wojcik,J., Sherman,D. et al. (2007) Broadening the horizon-level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol., 5, 44.

    5. del-Toro,N., Dumousseau,M., Orchard,S., Jimenez,R.C., Galeota,E., Launay,G., Goll,J., Breuer,K., Ono,K., Salwinski,L. et al. (2013) A new reference implementation of the PSICQUIC web service. Nucleic Acids Res., 41, W601-W606.

    6. Orchard,S., Kerrien,S., Abbani,S., Aranda,B., Bhate,J., Bidwell,S., Bridge,A., Briganti,L., Brinkman,F.S., Cesareni,G. et al. (2012) Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat. Methods, 9, 345-350.

    7. Licata,L., Briganti,L., Peluso,D., Perfetto,L., Iannuccelli,M., Galeota,E., Sacco,F., Palma,A., Nardozza,A.P., Santonico,E. et al. (2012) MINT, the molecular interaction database: 2012 update. Nucleic Acids Res., 40, D857-D861.

    8. Carducci,M., Perfetto,L., Briganti,L., Paoluzi,S., Costa,S., Zerweck,J., Schutkowski,M., Castagnoli,L. and Cesareni,G. (2012) The protein interaction network mediated by human SH3 domains. Biotechnol. Adv., 30, 4-15.

    9. Ceol,A., Chatr-Aryamontri,A., Licata,L. and Cesareni,G. (2008) Linking entries in protein interaction database to structured text: the FEBS Letters experiment. FEBS Lett., 582, 1171-1177.

    10. Leitner,F., Chatr-aryamontri,A., Mardis,S.A., Ceol,A., Krallinger,M., Licata,L., Hirschman,L., Cesareni,G. and Valencia,A. (2010) The FEBS Letters/BioCreative II.5 experiment: making biological information accessible. Nat. Biotechnol., 28, 897-899.

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