publication . Article . Other literature type . 2011

Full genome analysis of a novel adenovirus from the South Polar skua (Catharacta maccormicki) in Antarctica

Sung Ho Kang; Jin Won Song; Min-Goo Lee; Sook Young Lee; Yoon Kyoo Kang; Jeong-Hoon Kim; Yon Mi Park; Hak Jun Kim; Se Hun Gu;
Open Access
  • Published: 01 Nov 2011 Journal: Virology, volume 422, pages 144-150 (issn: 0042-6822, Copyright policy)
  • Publisher: Elsevier BV
Abstract
AbstractAdenoviruses have been identified in humans and a wide range of vertebrate animals, but not previously from the polar region. Here, we report the entire 26,340-bp genome of a novel adenovirus, detected by PCR, in tissues of six of nine South Polar skuas (Catharacta maccormicki), collected in Lake King Sejong, King George Island, Antarctica, from 2007 to 2009. The DNA polymerase, penton base, hexon and fiber genes of the South Polar skua adenovirus (SPSAdV) exhibited 68.3%, 75.4%, 74.9% and 48.0% nucleotide sequence similarity with their counterparts in turkey hemorrhagic enteritis virus. Phylogenetic analysis based on the entire genome revealed that SPSA...
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doi: 10.1016/j.virol.2011.10.008
pmid: 22078165
pmc: PMC7111983
Subjects
Medical Subject Headings: viruses
free text keywords: Virology, Adenovirus, Full genome sequence, South Polar skua, Antarctica, Article, Zoology, Gene, Catharacta maccormicki, biology.organism_classification, biology, Seabird, biology.animal, Virus, Phylogenetic tree, Nucleic acid sequence, Skua, Genome
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42 references, page 1 of 3

Aggarwal, N., Mittal, S.K.. Sequence analysis of porcine adenovirus type 3 E1 region, pIX and pIVa2 genes, and two novel open reading frames. Intervirology. 2000; 43 (1): 6-12 [PubMed]

Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.. Basic local alignment search tool. J. Mol. Biol.. 1990; 215 (3): 403-410 [OpenAIRE] [PubMed]

Austin, F.J., Webster, R.G.. Evidence of ortho- and paramyxoviruses in fauna from Antarctica. J. Wildl. Dis.. 1993; 29 (4): 568-571 [PubMed]

Beach, N.M., Duncan, R.B., Larsen, C.T., Meng, X.J., Sriranganathan, N., Pierson, F.W.. Comparison of 12 turkey hemorrhagic enteritis virus isolates allows prediction of genetic factors affecting virulence. J. Gen. Virol.. 2009; 90 (Pt 8): 1978-1985 [OpenAIRE] [PubMed]

Benkö, M., Harrach, B., Russell, W.C., Van Regenmortel, M.H.V., Fauquet, C.M., Bishop, D.H.L., Carstens, E., Estes, M., Lemon, S., Maniloff, J., Mayo, M.A., McGeoch, D., Pringle, C., Wickner, R.. Virus Taxonomy. 2000

Benkö, M., Harrach, B., Both, G.W., Russell, W.C., Adair, B.M., Ádám, É., de Jong, J.C., Hess, M., Johnson, M., Kajon, A., Kidd, A.H., Lehmkuhl, H.D., Li, Q.G., Mautner, V., Pring-Akerblom, P., Wadell, G., Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U., Ball, L.A.. Virus Taxonomy, VIIIth Report of the International Committee on Taxonomy of Viruses. 2005

Dan, A., Ruzsics, Z., Russell, W.C., Benkö, M., Harrach, B.. Analysis of the hexon gene sequence of bovine adenovirus type 4 provides further support for a new adenovirus genus (Atadenovirus). J. Gen. Virol.. 1998; 79 (Pt 6): 1453-1460 [OpenAIRE] [PubMed]

Davison, A.J., Harrach, B., Tidona, C.A., Darai, G.. The Springer Index of Viruses. 2002

Davison, A.J., Wright, K.M., Harrach, B.. DNA sequence of frog adenovirus. J. Gen. Virol.. 2000; 81 (Pt 10): 2431-2439 [OpenAIRE] [PubMed]

Davison, A.J., Benkö, M., Harrach, B.. Genetic content and evolution of adenoviruses. J. Gen. Virol.. 2003; 84 (Pt 11): 2895-2908 [OpenAIRE] [PubMed]

Farkas, S.L., Harrach, B., Benkö, M.. Completion of the genome analysis of snake adenovirus type 1, a representative of the reptilian lineage within the novel genus Atadenovirus. Virus Res.. 2008; 132 (1–2): 132-139 [PubMed]

Gauthier-Clere, M., Eterradossi, N., Toquin, D., Guittet, M., Kuntz, G., Maho, Y.L.. Serological survey of the king penguin, Aptenodytes patagonicus, in Crozet Archipelago for antibodies to infectious bursal disease, influenza A and Newcastle disease viruses. Polar Biol.. 2002; 25: 316-319

Goldstein, T., Colegrove, K.M., Hanson, M., Gulland, F.M.. Isolation of a novel adenovirus from California sea lions Zalophus californianus. Dis. Aquat. Organ.. 2011; 94 (3): 243-248 [OpenAIRE] [PubMed]

Houng, H.S., Clavio, S., Graham, K., Kuschner, R., Sun, W., Russell, K.L., Binn, L.N.. Emergence of a new human adenovirus type 4 (Ad4) genotype: identification of a novel inverted terminal repeated (ITR) sequence from majority of Ad4 isolates from US military recruits. J. Clin. Virol.. 2006; 35 (4): 381-387 [PubMed]

Jiang, P., Ojkic, D., Tuboly, T., Huber, P., Nagy, E.. Application of the polymerase chain reaction to detect fowl adenoviruses. Can. J. Vet. Res.. 1999; 63 (2): 124-128 [OpenAIRE] [PubMed]

42 references, page 1 of 3
Related research
Abstract
AbstractAdenoviruses have been identified in humans and a wide range of vertebrate animals, but not previously from the polar region. Here, we report the entire 26,340-bp genome of a novel adenovirus, detected by PCR, in tissues of six of nine South Polar skuas (Catharacta maccormicki), collected in Lake King Sejong, King George Island, Antarctica, from 2007 to 2009. The DNA polymerase, penton base, hexon and fiber genes of the South Polar skua adenovirus (SPSAdV) exhibited 68.3%, 75.4%, 74.9% and 48.0% nucleotide sequence similarity with their counterparts in turkey hemorrhagic enteritis virus. Phylogenetic analysis based on the entire genome revealed that SPSA...
Read more
doi: 10.1016/j.virol.2011.10.008
pmid: 22078165
pmc: PMC7111983
Subjects
Medical Subject Headings: viruses
free text keywords: Virology, Adenovirus, Full genome sequence, South Polar skua, Antarctica, Article, Zoology, Gene, Catharacta maccormicki, biology.organism_classification, biology, Seabird, biology.animal, Virus, Phylogenetic tree, Nucleic acid sequence, Skua, Genome
Related Organizations
View more
Download fromView all 6 versions
Virology
Article
Provider: UnpayWall
Elsevier
Article
Provider: CORE (RIOXX-UK Aggregator)
Europe PubMed Central
Article . 2011
Provider: PubMed Central
BASE (Open Access Aggregator)
Article . 2012
Provider: BASE (Open Access Aggregator)
View more
42 references, page 1 of 3

Aggarwal, N., Mittal, S.K.. Sequence analysis of porcine adenovirus type 3 E1 region, pIX and pIVa2 genes, and two novel open reading frames. Intervirology. 2000; 43 (1): 6-12 [PubMed]

Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.. Basic local alignment search tool. J. Mol. Biol.. 1990; 215 (3): 403-410 [OpenAIRE] [PubMed]

Austin, F.J., Webster, R.G.. Evidence of ortho- and paramyxoviruses in fauna from Antarctica. J. Wildl. Dis.. 1993; 29 (4): 568-571 [PubMed]

Beach, N.M., Duncan, R.B., Larsen, C.T., Meng, X.J., Sriranganathan, N., Pierson, F.W.. Comparison of 12 turkey hemorrhagic enteritis virus isolates allows prediction of genetic factors affecting virulence. J. Gen. Virol.. 2009; 90 (Pt 8): 1978-1985 [OpenAIRE] [PubMed]

Benkö, M., Harrach, B., Russell, W.C., Van Regenmortel, M.H.V., Fauquet, C.M., Bishop, D.H.L., Carstens, E., Estes, M., Lemon, S., Maniloff, J., Mayo, M.A., McGeoch, D., Pringle, C., Wickner, R.. Virus Taxonomy. 2000

Benkö, M., Harrach, B., Both, G.W., Russell, W.C., Adair, B.M., Ádám, É., de Jong, J.C., Hess, M., Johnson, M., Kajon, A., Kidd, A.H., Lehmkuhl, H.D., Li, Q.G., Mautner, V., Pring-Akerblom, P., Wadell, G., Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U., Ball, L.A.. Virus Taxonomy, VIIIth Report of the International Committee on Taxonomy of Viruses. 2005

Dan, A., Ruzsics, Z., Russell, W.C., Benkö, M., Harrach, B.. Analysis of the hexon gene sequence of bovine adenovirus type 4 provides further support for a new adenovirus genus (Atadenovirus). J. Gen. Virol.. 1998; 79 (Pt 6): 1453-1460 [OpenAIRE] [PubMed]

Davison, A.J., Harrach, B., Tidona, C.A., Darai, G.. The Springer Index of Viruses. 2002

Davison, A.J., Wright, K.M., Harrach, B.. DNA sequence of frog adenovirus. J. Gen. Virol.. 2000; 81 (Pt 10): 2431-2439 [OpenAIRE] [PubMed]

Davison, A.J., Benkö, M., Harrach, B.. Genetic content and evolution of adenoviruses. J. Gen. Virol.. 2003; 84 (Pt 11): 2895-2908 [OpenAIRE] [PubMed]

Farkas, S.L., Harrach, B., Benkö, M.. Completion of the genome analysis of snake adenovirus type 1, a representative of the reptilian lineage within the novel genus Atadenovirus. Virus Res.. 2008; 132 (1–2): 132-139 [PubMed]

Gauthier-Clere, M., Eterradossi, N., Toquin, D., Guittet, M., Kuntz, G., Maho, Y.L.. Serological survey of the king penguin, Aptenodytes patagonicus, in Crozet Archipelago for antibodies to infectious bursal disease, influenza A and Newcastle disease viruses. Polar Biol.. 2002; 25: 316-319

Goldstein, T., Colegrove, K.M., Hanson, M., Gulland, F.M.. Isolation of a novel adenovirus from California sea lions Zalophus californianus. Dis. Aquat. Organ.. 2011; 94 (3): 243-248 [OpenAIRE] [PubMed]

Houng, H.S., Clavio, S., Graham, K., Kuschner, R., Sun, W., Russell, K.L., Binn, L.N.. Emergence of a new human adenovirus type 4 (Ad4) genotype: identification of a novel inverted terminal repeated (ITR) sequence from majority of Ad4 isolates from US military recruits. J. Clin. Virol.. 2006; 35 (4): 381-387 [PubMed]

Jiang, P., Ojkic, D., Tuboly, T., Huber, P., Nagy, E.. Application of the polymerase chain reaction to detect fowl adenoviruses. Can. J. Vet. Res.. 1999; 63 (2): 124-128 [OpenAIRE] [PubMed]

42 references, page 1 of 3
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