Visualizing RNA Secondary Structure Base Pair Binding Probabilities using Nested Concave Hulls

Conference object English OPEN
Sansen , Joris; Bourqui , Romain; Thebault , Patricia; Allali , Julien; Auber , David;
  • Publisher: HAL CCSD
  • Subject: [ SDV.BBM ] Life Sciences [q-bio]/Biochemistry, Molecular Biology | [ INFO.INFO-IR ] Computer Science [cs]/Information Retrieval [cs.IR] | [ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] | [ INFO.INFO-BI ] Computer Science [cs]/Bioinformatics [q-bio.QM]

International audience; The challenge 1 of the BIOVIS 2015 design contest consists in designing an intuitive visual depiction of base pairs binding probabilities for secondary structure of ncRNA. Our representation depicts the potential nucleotide pairs binding using ne... View more
  • References (3)

    [1] D. Auber, M. Delest, J.-P. Domenger, and S. Dulucq. Efficient drawing of rna secondary structure. J. Graph Algorithms Appl., 10(2):329-351, 2006.

    [2] A. Lambert, R. Bourqui, and D. Auber. Winding roads: Routing edges into bundles. Computer Graphics Forum, 29(3):853-862, 2010.

    [3] A. Lambert, F. Queyroi, and R. Bourqui. Visualizing patterns in nodelink diagrams. In Information Visualisation (IV), 2012 16th International Conference on, pages 48-53. IEEE, 2012.

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