publication . Article . 2017

Comparative study of the gut microbiome potentially related to milk protein in Murrah buffaloes (Bubalus bubalis) and Chinese Holstein cattle

Zhang, Jiachao; Xu, Chuanbiao; Huo, Dongxue; Hu, Qisong; Peng, Qiannan;
Open Access English
  • Published: 01 Feb 2017 Journal: Scientific Reports, volume 7 (issn: 2045-2322, eissn: 2045-2322, Copyright policy)
  • Publisher: Nature Publishing Group
Abstract
Previous studies suggested a close relationship between ruminant gut microbes and the mammary gland. In this study, shotgun metagenomic sequencing was used to reveal the differences in the intestinal microbiome potentially related to milk components in Murrah buffaloes and Chinese Holstein cattle. A PCoA based on the weighted Unifrac distances showed an apparent clustering pattern in the structure of intestinal microbiota between buffalo and cattle. We could attribute the structural difference to the genera of Sutterella, Coprococcus and Dorea. A further analysis of microbial functional features revealed that the biosynthesis of amino acids (including lysine, va...
Subjects
mesheuropmc: food and beverages
free text keywords: Article
Related Organizations
31 references, page 1 of 3

Barłowska J., Szwajkowska M., Litwińczuk Z. & Król J. Nutritional value and technological suitability of milk from various animal species used for dairy production. Comprehensive Reviews in Food Science and Food Safety 10, 291–302 (2011).

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Zhang Y.. Strong and stable geographic differentiation of swamp buffalo maternal and paternal lineages indicates domestication in the China/Indochina border region. Molecular ecology 25, 1530–1550, doi: 10.1111/mec.13518 (2016).26677084 [OpenAIRE] [PubMed] [DOI]

Funes-Monzote F., Monzote M., Lantinga E. & Van Keulen H. Conversion of specialised dairy farming systems into sustainable mixed farming systems in Cuba. Environment, development and sustainability 11, 765–783 (2009). [OpenAIRE]

Bobe G., Lindberg G. L., Freeman A. E. & Beitz D. C. Short communication: Composition of milk protein and milk fatty acids is stable for cows differing in genetic merit for milk production. Journal of dairy science 90, 3955–3960, doi: 10.3168/jds.2007-0099 (2007).17639007 [PubMed] [DOI]

Nicholson J. K.. Host-gut microbiota metabolic interactions. Science 336, 1262–1267, doi: 10.1126/science.1223813 (2012).22674330 [OpenAIRE] [PubMed] [DOI]

Kau A. L., Ahern P. P., Griffin N. W., Goodman A. L. & Gordon J. I. Human nutrition, the gut microbiome and the immune system. Nature 474, 327–336, doi: 10.1038/nature10213 (2011).21677749 [OpenAIRE] [PubMed] [DOI]

Jimenez E.. Oral administration of Lactobacillus strains isolated from breast milk as an alternative for the treatment of infectious mastitis during lactation. Applied and environmental microbiology 74, 4650–4655, doi: 10.1128/AEM.02599-07 (2008).18539795 [OpenAIRE] [PubMed] [DOI]

Oikonomou G.. Microbiota of cow’s milk; distinguishing healthy, sub-clinically and clinically diseased quarters. PloS one 9, e85904, doi: 10.1371/journal.pone.0085904 (2014).24465777 [OpenAIRE] [PubMed] [DOI]

Dai X.. Metagenomic insights into the fibrolytic microbiome in yak rumen. PloS one 7, e40430, doi: 10.1371/journal.pone.0040430 (2012).22808161 [OpenAIRE] [PubMed] [DOI]

Hess M.. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331, 463–467, doi: 10.1126/science.1200387 (2011).21273488 [PubMed] [DOI]

Ellis R. J.. Comparison of the distal gut microbiota from people and animals in africa. Plos One 8, doi: ARTN e54783 10.1371/journal.pone.0054783 (2013). [OpenAIRE] [DOI]

Ma C.. Bovine mastitis may be associated with the deprivation of gut Lactobacillus. Beneficial microbes 9, 1–8, doi: 10.3920/BM2015.0048 (2015). [DOI]

He B.. Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis. Scientific reports 5, 10604, doi: 10.1038/srep10604 (2015).26040234 [OpenAIRE] [PubMed] [DOI]

Xu J.. A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299, 2074–2076, doi: 10.1126/science.1080029 (2003).12663928 [PubMed] [DOI]

31 references, page 1 of 3
Abstract
Previous studies suggested a close relationship between ruminant gut microbes and the mammary gland. In this study, shotgun metagenomic sequencing was used to reveal the differences in the intestinal microbiome potentially related to milk components in Murrah buffaloes and Chinese Holstein cattle. A PCoA based on the weighted Unifrac distances showed an apparent clustering pattern in the structure of intestinal microbiota between buffalo and cattle. We could attribute the structural difference to the genera of Sutterella, Coprococcus and Dorea. A further analysis of microbial functional features revealed that the biosynthesis of amino acids (including lysine, va...
Subjects
mesheuropmc: food and beverages
free text keywords: Article
Related Organizations
31 references, page 1 of 3

Barłowska J., Szwajkowska M., Litwińczuk Z. & Król J. Nutritional value and technological suitability of milk from various animal species used for dairy production. Comprehensive Reviews in Food Science and Food Safety 10, 291–302 (2011).

Li Z.. Identifying management strategies to improve sustainability and household income for herders on the desert steppe in Inner Mongolia, China. Agricultural Systems 132, 62–72, doi: 10.1016/j.agsy.2014.08.011 (2015). [DOI]

Zhang Y.. Strong and stable geographic differentiation of swamp buffalo maternal and paternal lineages indicates domestication in the China/Indochina border region. Molecular ecology 25, 1530–1550, doi: 10.1111/mec.13518 (2016).26677084 [OpenAIRE] [PubMed] [DOI]

Funes-Monzote F., Monzote M., Lantinga E. & Van Keulen H. Conversion of specialised dairy farming systems into sustainable mixed farming systems in Cuba. Environment, development and sustainability 11, 765–783 (2009). [OpenAIRE]

Bobe G., Lindberg G. L., Freeman A. E. & Beitz D. C. Short communication: Composition of milk protein and milk fatty acids is stable for cows differing in genetic merit for milk production. Journal of dairy science 90, 3955–3960, doi: 10.3168/jds.2007-0099 (2007).17639007 [PubMed] [DOI]

Nicholson J. K.. Host-gut microbiota metabolic interactions. Science 336, 1262–1267, doi: 10.1126/science.1223813 (2012).22674330 [OpenAIRE] [PubMed] [DOI]

Kau A. L., Ahern P. P., Griffin N. W., Goodman A. L. & Gordon J. I. Human nutrition, the gut microbiome and the immune system. Nature 474, 327–336, doi: 10.1038/nature10213 (2011).21677749 [OpenAIRE] [PubMed] [DOI]

Jimenez E.. Oral administration of Lactobacillus strains isolated from breast milk as an alternative for the treatment of infectious mastitis during lactation. Applied and environmental microbiology 74, 4650–4655, doi: 10.1128/AEM.02599-07 (2008).18539795 [OpenAIRE] [PubMed] [DOI]

Oikonomou G.. Microbiota of cow’s milk; distinguishing healthy, sub-clinically and clinically diseased quarters. PloS one 9, e85904, doi: 10.1371/journal.pone.0085904 (2014).24465777 [OpenAIRE] [PubMed] [DOI]

Dai X.. Metagenomic insights into the fibrolytic microbiome in yak rumen. PloS one 7, e40430, doi: 10.1371/journal.pone.0040430 (2012).22808161 [OpenAIRE] [PubMed] [DOI]

Hess M.. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331, 463–467, doi: 10.1126/science.1200387 (2011).21273488 [PubMed] [DOI]

Ellis R. J.. Comparison of the distal gut microbiota from people and animals in africa. Plos One 8, doi: ARTN e54783 10.1371/journal.pone.0054783 (2013). [OpenAIRE] [DOI]

Ma C.. Bovine mastitis may be associated with the deprivation of gut Lactobacillus. Beneficial microbes 9, 1–8, doi: 10.3920/BM2015.0048 (2015). [DOI]

He B.. Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis. Scientific reports 5, 10604, doi: 10.1038/srep10604 (2015).26040234 [OpenAIRE] [PubMed] [DOI]

Xu J.. A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299, 2074–2076, doi: 10.1126/science.1080029 (2003).12663928 [PubMed] [DOI]

31 references, page 1 of 3
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publication . Article . 2017

Comparative study of the gut microbiome potentially related to milk protein in Murrah buffaloes (Bubalus bubalis) and Chinese Holstein cattle

Zhang, Jiachao; Xu, Chuanbiao; Huo, Dongxue; Hu, Qisong; Peng, Qiannan;