Microbial co-habitation and lateral gene transfer: what transposases can tell us

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Hooper, Sean D; Mavromatis, Konstantinos; Kyrpides, Nikos C;
(2009)

Background Determining the habitat range for various microbes is not a simple, straightforward matter, as habitats interlace, microbes move between habitats, and microbial communities change over time. In this study, we explore an approach using the history of lateral g... View more
  • References (41)
    41 references, page 1 of 5

    1. Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM: Comparative metagenomics of microbial communities. Science 2005, 308:554-557.

    2. Oberhardt MA, Puchalka J, Fryer KE, Dos Santos VA, Papin JA: Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1. J Bacteriol 2008, 190:2790-2803.

    3. Shinn EA, Griffin DW, Seba DB: Atmospheric transport of mold spores in clouds of desert dust. Arch Environ Health 2003, 58:498-504.

    4. Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D, Bork P: A molecular study of microbe transfer between distant environments. PLoS ONE 2008, 3:e2607.

    5. Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF: Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 2004, 428:37-43.

    6. Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernandez M, Murillo C, Acosta LG, et al.: Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 2007, 450:560-565.

    7. Tamames J, Moya A: Estimating the extent of horizontal gene transfer in metagenomic sequences. BMC Genomics 2008, 9:136.

    8. Kato K, Ohtsuki K, Mitsuda H, Yomo T, Negoro S, Urabe I: Insertion sequence IS6100 on plasmid pOAD2, which degrades nylon oligomers. J Bacteriol 1994, 176:1197-1200.

    9. Bisercic M, Ochman H: The ancestry of insertion sequences common to Escherichia coli and Salmonella typhimurium. J Bacteriol 1993, 175:7863-7868.

    10. Bourgoin F, Guedon G, Pebay M, Roussel Y, Panis C, Decaris B: Characterization of a mosaic ISS1 element and evidence for the recent horizontal transfer of two different types of ISS1 between Streptococcus thermophilus and Lactococcus lactis. Gene 1996, 178:15-23.

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