publication . Article . 2013

Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra

Niels Hulstaert; Florian Reisinger; Jonathan Rameseder; Harald Barsnes; Juan Antonio Vizcaíno; Lennart Martens;
Open Access
  • Published: 01 Dec 2013 Journal: Journal of Proteomics, volume 95, pages 89-92 (issn: 1874-3919, Copyright policy)
  • Publisher: Elsevier BV
  • Country: United States
Abstract
Graphical abstract
Subjects
free text keywords: Biophysics, Biochemistry, Application programming interface, Graphical user interface, business.industry, business, Pride, media_common.quotation_subject, media_common, Information retrieval, End user, Parsing, computer.software_genre, computer, Annotation, Java, computer.programming_language, Computer science, Source code, Technical Note, API, application programming interface, asap, Automatic Spectrum Annotation Pipeline, GUI, graphical user interface, PRIDE, PRoteomics IDEntifications (database), PSM, peptide spectrum match, PTM, post-translational modification, Proteomics, Bioinformatics, Mass spectrometry
Funded by
EC| PROTEOMEXCHANGE
Project
PROTEOMEXCHANGE
International Data Exchange and Data Representation Standards for Proteomics
  • Funder: European Commission (EC)
  • Project Code: 260558
  • Funding stream: FP7 | SP1 | HEALTH
,
WT| The Proteomics Identifications Database (PRIDE).
Project
  • Funder: Wellcome Trust (WT)
  • Project Code: 085949
  • Funding stream: Cellular and Molecular Neuroscience
,
EC| PRIME-XS
Project
PRIME-XS
Proteomics Research Infrastructure Maximising knowledge EXchange and access (XS)
  • Funder: European Commission (EC)
  • Project Code: 262067
  • Funding stream: FP7 | SP4 | INFRA
,
EC| LIPIDOMICNET
Project
LIPIDOMICNET
Lipid droplets as dynamic organelles of fat deposition and release: Translational research towards human disease
  • Funder: European Commission (EC)
  • Project Code: 202272
  • Funding stream: FP7 | SP1 | HEALTH
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