Chi8: a GPU program for detecting significant interacting SNPs with the Chi-square 8-df test

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Al-jouie, Abdulrhman; Esfandiari, Mohammadreza; Ramakrishnan, Srividya; Roshan, Usman;

Background Determining interacting SNPs in genome-wide association studies is computationally expensive yet of considerable interest in genomics. Findings We present a program Chi8 that calculates the Chi-square 8 degree of freedom test between all pairs of SNPs in a br... View more
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