Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the 'ancestral' sub-Saharan African intestinal microbiome.
- Published: 06 May 2020 Journal: Microbiome (issn: 2049-2618,
Copyright policy) - Publisher: BMC
- Aix-Marseille University France
- University of Cambridge United Kingdom
- WT - Wellcome Sanger Institute United Kingdom
- Funder: Wellcome Trust (WT)
1. J. Lederberg, A. T. McCray, 'Ome sweet' omics: A genealogical treasury of words. Scientist 15, 8 (2010).
2. C. Warinner, C. Speller, M. J. Collins, C. M. Lewis, Ancient human microbiomes. J Hum Evol. 79, 125-136 (2015). [OpenAIRE]
3. E. Thursby, N. Juge, Introduction to the human gut microbiota. Biochem J. 474, 1823-1836 (2017). [OpenAIRE]
4. L. W. van den Elsen, H. C. Poyntz, L. S. Weyrich, W. Young, E. E. Forbes-Blom, Embracing the gut microbiota: The new frontier for inflammatory and infectious diseases. Clin Transl Immunology 6, doi: 10.1038/cti.2016.91 (2017).
5. J. C. Clemente. E. C. Pehrsson, M. J. Blaser, K. Sandhu, Z. Gao, B. Wang, M. Magris, G. Hidalgo, M Contreras, Ó. Noya-Alarcón, O. Lander, J. McDonald, M. Cox, J. Walter, P. L. Oh, J. F. Ruiz, S. Rodriguez, N. Shen, S. J. Song, J. Metcalf, R. Knight, G. Dantas, M. G. Dominguez-Bello, The microbiome of uncontacted Amerindians. Sci Adv. 1, doi: 10.1126/sciadv.1500183 (2015).
6. E. R. Davenport, J. G. Sanders, S. J. Song, K. R. Amato, A. G. Clark, R. Knight, The human microbiome in evolution. BMC Biol. 15, doi: 10.1186/s12915-017-0454-7 (2017).
7. M. J. Blaser, The past and future biology of the human microbiome in an age of extinctions. Cell 172, 1173-1177 (2018). [OpenAIRE]
8. S. L. Schnorr, M. Candela, S. Rampelli, M. Centanni, C. Consolandi, G. Basaglia, S. Turroni, E. Biagi, C. Peano, M. Severgnini, J. Fiori, R. Gotti, G. De Bellis, D. Luiselli, P. Brigidi, A. Mabulla, F. Marlowe, A. G. Henry, A. N. Crittenden, Gut microbiome of the Hadza hunter-gatherers. Nat Commun. 5, doi: 10.1038/ncomms4654 (2014).
9. A. J. Obregon-Tito, R. Y. Tito, J. Metcalf, K. Sankaranarayanan, J. C. Clemente, L. K. Ursell, Z. Zech Xu, W. Van Treuren, R. Knight, P. M. Gaffney, P. Spicer, P. Lawson, L. Marin-Reyes, O. Trujillo-Villarroel, M. Foster, E. Guija-Poma, L. Troncoso-Corzo, C. Warinner, A. T. Ozga, C. M. Lewis, Subsistence strategies in traditional societies distinguish gut microbiomes. Nat Commun. 6505, doi: 10.1038/ncomms7505 (2015).
10. C. Warinner, C. M. Lewis, Microbiome and health in past and present human populations. Am Anthrop. 117, 740-741 (2015). [OpenAIRE]
11. R. Lee, R. H. Daly, Cambridge encyclopaedia of hunters and gatherers. Cambridge, Cambridge University Press ISBN 9780521609197 (1999).
12. A. Gomez, K. J. Petrzelkova, M. B. Burns, C. J. Yeoman, A. R. Amato, K. Vlckova, D. Modry, A. Todd, C. A. Jost Robinson, M. J. Remis, M. G. Torralba, E. Morton, J. D. Umaña, F. Carbonero, H. R. Gaskins, K. E. Nelson, B. A. Wilson, R. M. Stumpf, B. A. White, S. R. Leigh, Gut microbiome of coexisting BaAka Pygmies and Bantu reflects gradients of traditional subsistence patterns. Cell Rep. 14, 2142-2153 (2016).
13. C. Girard, N. Tromas, M. Amyot, B. J. Shapiro, Gut microbiome of the Canadian Arctic Inuit. mSphere 2, doi: 10.1128/mSphere.00297-16 (2017).
14. A. Y. Voigt, P. I. Costea, J. R. Kultima, S. S. Li, G. Zeller, S. Sunagawa, P. Bork, Temporal and technical variability of human gut metagenomes. Genome Biol. 16, doi: 10.1186/s13059-015-0639-8 (2015).
15. J. Walter, R. Ley, The human gut microbiome: Ecology and recent evolutionary changes. Annu Rev Microbiol. 65, 411-429 (2011).
Related research
- Aix-Marseille University France
- University of Cambridge United Kingdom
- WT - Wellcome Sanger Institute United Kingdom
- Funder: Wellcome Trust (WT)
1. J. Lederberg, A. T. McCray, 'Ome sweet' omics: A genealogical treasury of words. Scientist 15, 8 (2010).
2. C. Warinner, C. Speller, M. J. Collins, C. M. Lewis, Ancient human microbiomes. J Hum Evol. 79, 125-136 (2015). [OpenAIRE]
3. E. Thursby, N. Juge, Introduction to the human gut microbiota. Biochem J. 474, 1823-1836 (2017). [OpenAIRE]
4. L. W. van den Elsen, H. C. Poyntz, L. S. Weyrich, W. Young, E. E. Forbes-Blom, Embracing the gut microbiota: The new frontier for inflammatory and infectious diseases. Clin Transl Immunology 6, doi: 10.1038/cti.2016.91 (2017).
5. J. C. Clemente. E. C. Pehrsson, M. J. Blaser, K. Sandhu, Z. Gao, B. Wang, M. Magris, G. Hidalgo, M Contreras, Ó. Noya-Alarcón, O. Lander, J. McDonald, M. Cox, J. Walter, P. L. Oh, J. F. Ruiz, S. Rodriguez, N. Shen, S. J. Song, J. Metcalf, R. Knight, G. Dantas, M. G. Dominguez-Bello, The microbiome of uncontacted Amerindians. Sci Adv. 1, doi: 10.1126/sciadv.1500183 (2015).
6. E. R. Davenport, J. G. Sanders, S. J. Song, K. R. Amato, A. G. Clark, R. Knight, The human microbiome in evolution. BMC Biol. 15, doi: 10.1186/s12915-017-0454-7 (2017).
7. M. J. Blaser, The past and future biology of the human microbiome in an age of extinctions. Cell 172, 1173-1177 (2018). [OpenAIRE]
8. S. L. Schnorr, M. Candela, S. Rampelli, M. Centanni, C. Consolandi, G. Basaglia, S. Turroni, E. Biagi, C. Peano, M. Severgnini, J. Fiori, R. Gotti, G. De Bellis, D. Luiselli, P. Brigidi, A. Mabulla, F. Marlowe, A. G. Henry, A. N. Crittenden, Gut microbiome of the Hadza hunter-gatherers. Nat Commun. 5, doi: 10.1038/ncomms4654 (2014).
9. A. J. Obregon-Tito, R. Y. Tito, J. Metcalf, K. Sankaranarayanan, J. C. Clemente, L. K. Ursell, Z. Zech Xu, W. Van Treuren, R. Knight, P. M. Gaffney, P. Spicer, P. Lawson, L. Marin-Reyes, O. Trujillo-Villarroel, M. Foster, E. Guija-Poma, L. Troncoso-Corzo, C. Warinner, A. T. Ozga, C. M. Lewis, Subsistence strategies in traditional societies distinguish gut microbiomes. Nat Commun. 6505, doi: 10.1038/ncomms7505 (2015).
10. C. Warinner, C. M. Lewis, Microbiome and health in past and present human populations. Am Anthrop. 117, 740-741 (2015). [OpenAIRE]
11. R. Lee, R. H. Daly, Cambridge encyclopaedia of hunters and gatherers. Cambridge, Cambridge University Press ISBN 9780521609197 (1999).
12. A. Gomez, K. J. Petrzelkova, M. B. Burns, C. J. Yeoman, A. R. Amato, K. Vlckova, D. Modry, A. Todd, C. A. Jost Robinson, M. J. Remis, M. G. Torralba, E. Morton, J. D. Umaña, F. Carbonero, H. R. Gaskins, K. E. Nelson, B. A. Wilson, R. M. Stumpf, B. A. White, S. R. Leigh, Gut microbiome of coexisting BaAka Pygmies and Bantu reflects gradients of traditional subsistence patterns. Cell Rep. 14, 2142-2153 (2016).
13. C. Girard, N. Tromas, M. Amyot, B. J. Shapiro, Gut microbiome of the Canadian Arctic Inuit. mSphere 2, doi: 10.1128/mSphere.00297-16 (2017).
14. A. Y. Voigt, P. I. Costea, J. R. Kultima, S. S. Li, G. Zeller, S. Sunagawa, P. Bork, Temporal and technical variability of human gut metagenomes. Genome Biol. 16, doi: 10.1186/s13059-015-0639-8 (2015).
15. J. Walter, R. Ley, The human gut microbiome: Ecology and recent evolutionary changes. Annu Rev Microbiol. 65, 411-429 (2011).
Related research
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