SNP identification, verification, and utility for population genetics in a non-model genus

Article English OPEN
Williams, Larissa M; Ma, Xin; Boyko, Adam R; Bustamante, Carlos D; Oleksiak, Marjorie F;
  • Publisher: BioMed Central
  • Journal: BMC Genetics,volume 11,pages32-32 (issn: 1471-2156, eissn: 1471-2156)
  • Related identifiers: doi: 10.1186/1471-2156-11-32, pmc: PMC2874759
  • Subject: QH426-470 | Genetics(clinical) | Genetics | Research article
    mesheuropmc: animal structures

<p>Abstract</p> <p>Background</p> <p>By targeting SNPs contained in both coding and non-coding areas of the genome, we are able to identify genetic differences and characterize genome-wide patterns of variation among individuals, populations and species. We investigated... View more
  • References (78)
    78 references, page 1 of 8

    1. Bordoni R, Bonnal R, Rizzi E, Carrera P, Benedetti S, Cremonesi L, Stenirri S, Colombo A, Montrasio C, Bonalumi S, et al.: Evaluation of human gene variant detection in amplicon pools by the GS-FLX parallel Pyrosequencer. Bmc Genomics 2008, 9:464.

    2. Garber M, Zody MC, Arachchi HM, Berlin A, Gnerre S, Green LM, Lennon N, Nusbaum C: Closing gaps in the human genome using sequencing by synthesis. Genome Biology 2009, 10:R60.

    3. Ingman M, Gyllensten U: SNP frequency estimation using massively parallel sequencing of pooled DNA. European Journal of Human Genetics 2009, 17:383-386.

    4. Turner EH, Lee CL, Ng SB, Nickerson DA, Shendure J: Massively parallel exon capture and library-free resequencing across 16 genomes. Nature Methods 2009, 6:315-316.

    5. Zheng JB, Moorhead M, Weng L, Siddiqui F, Carlton VEH, Ireland JS, Lee L, Peterson J, Wilkins J, Lin S, et al.: High-throughput, high-accuracy arraybased resequencing. Proceedings of the National Academy of Sciences of the United States of America 2009, 106:6712-6717.

    6. De Schutter K, Lin YC, Tiels P, Van Hecke A, Glinka S, Weber-Lehmann J, Rouze P, de Peer YV, Callewaert N: Genome sequence of the recombinant protein production host Pichia pastoris. Nature Biotechnology 2009, 27:561-U104.

    7. Iacono M, Villa L, Fortini D, Bordoni R, Imperi F, Bonnal RJP, SicheritzPonten T, De Bellis G, Visca P, Cassone A, Carattoli A: Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group. Antimicrobial Agents and Chemotherapy 2008, 52:2616-2625.

    8. Novaes E, Drost DR, Farmerie WG, Pappas GJ, Grattapaglia D, Sederoff RR, Kirst M: High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. Bmc Genomics 2008, 9:.

    9. Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH: Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular Ecology 2008, 17:1636-1647.

    10. Bontell IL, Hall N, Ashelford KE, Dubey JP, Boyle JP, Lindh J, Smith JE: Whole genome sequencing of a natural recombinant Toxoplasma gondii strain reveals chromosome sorting and local allelic variants. Genome Biology 2009, 10:R53.

  • Related Research Results (1)
  • Similar Research Results (2)
  • Metrics
    No metrics available