Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes

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Grusea, Simona; Rodríguez, Willy; Pinchon, Didier; Chikhi, Lounès; Boitard, Simon; Mazet, Olivier;
  • Publisher: Springer Verlag (Germany)
  • Subject: [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE] | population structure | IICR (inverse instantaneous coalescence rate) | population size change | demographic history | structured coalescent. | rate matrix | [MATH.MATH-GM]Mathematics [math]/General Mathematics [math.GM]

International audience; The increasing amount of genomic data currently available is expanding the horizons of population genetics inference. A wide range of methods have been published allowing to detect and date major changes in population size during the history of s... View more
  • References (17)
    17 references, page 1 of 2

    Mark A. Beaumont. Detecting population expansion and decline using microsatellites. Genetics, 153(4):2013{2029, 1999.

    Mark A. Beaumont. Recent developments in genetic data analysis: what can they tell us about human demographic history? Heredity, 92(5):365{379, 2004.

    Lounes Chikhi, Vitor C. Sousa, Pierre Luisi, Benoit Goossens, and Mark A. Beaumont. The confounding e ects of population structure, genetic diversity and the sampling scheme on the detection and quanti cation of population size changes. Genetics, 186(3):983{995, 2010. doi: 10.1534/genetics.110.118661.

    Lounes Chikhi, Willy Rodriguez, Simona Grusea, Patricia Santos, Simon Boitard, and Olivier Mazet. The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice. Heredity, 2018.

    Benoit Goossens, Lounes Chikhi, Marc Ancrenaz, Isabelle Lackman-Ancrenaz, Patrick Andau, Michael W. Bruford, et al. Genetic signature of anthropogenic population collapse in orangutans. PLoS Biology, 4(2):285, 2006.

    Robert C. Gri ths and Simon Tavare. Sampling theory for neutral alleles in a varying environment. Philosophical Transactions of the Royal Society of London B: Biological Sciences, 344(1310):403{410, 1994. ISSN 0962-8436. doi: 10.1098/rstb.1994.0079.

    Rasmus Heller, Lounes Chikhi, and Hans Redlef Siegismund. The confounding e ect of population structure on bayesian skyline plot inferences of demographic history. PLoS ONE, 8 (5):e62992, 2013. doi: 10.1371/journal.pone.0062992.

    Olivier Mazet, Willy Rodriguez, Simona Grusea, Simon Boitard, and Lounes Chikhi. On the importance of being structured: instantaneous coalescence rates and human evolution{lessons for ancestral population size inference? Heredity, 116(4):362{371, 2016. ISSN 1365-2540. doi: 10.1038/hdy.2015.104.

    M Nei and N Takahata. E ective population size, genetic diversity, and coalescence time in subdivided populations. J. Mol. Evol., 37(3):240{4, 1993.

    Richard W.D. Nickalls. A new approach to solving the cubic: solution revealed. The Mathematical Gazette, 77:354{359, 1993.

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